# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CyFj11" in publications use:'
type: software
license: MIT
title: 'CyFj11: Parse FlowJo V11 Workspace Files and Export to FlowJo V10'
version: 0.99.113
doi: 10.64898/2026.07.28.741192
abstract: Provides functions to parse FlowJo v11 workspace files (.flowjo) and extract
  gating information, populations, and associated FCS files. Includes utilities for
  exporting data to FlowJo v10 workspace format. The package enables bidirectional
  data flow between FlowJo and R/Bioconductor, facilitating reproducible analysis
  workflows.
authors:
- family-names: Jagla
  given-names: Bernd
  email: bernd.jagla@pasteur.fr
  orcid: https://orcid.org/0000-0002-7696-0484
  affiliation: Institut Pasteur
- family-names: Culina
  given-names: Slobodan
  email: Slobodan.culina@pasteur.fr
  affiliation: Institut Pasteur
- family-names: Le Guerroue
  given-names: Francois
  email: francois.le-guerroue@pasteur.fr
  affiliation: Institut Pasteur
- family-names: Karkeni
  given-names: Esma
  email: esma.karkeni@pasteur.fr
  affiliation: Institut Pasteur
- family-names: Hasan
  given-names: Milena
  email: milena.hasan@pasteur.fr
  affiliation: Institut Pasteur
preferred-citation:
  type: article
  title: 'CyFj11: FlowJo v11 Workspace Import and Legacy Format Export for R-Based
    Flow Cytometry Analysis'
  authors:
  - family-names: Jagla
    given-names: Bernd
    email: bernd.jagla@pasteur.fr
    orcid: https://orcid.org/0000-0002-7696-0484
    affiliation: Institut Pasteur
  - family-names: Culina
    given-names: Slobodan
    email: Slobodan.culina@pasteur.fr
    affiliation: Institut Pasteur
  - family-names: Le Guerroue
    given-names: Francois
    email: francois.le-guerroue@pasteur.fr
    affiliation: Institut Pasteur
  - family-names: Karkeni
    given-names: Esma
    email: esma.karkeni@pasteur.fr
    affiliation: Institut Pasteur
  - family-names: Hasan
    given-names: Milena
    email: milena.hasan@pasteur.fr
    affiliation: Institut Pasteur
  journal: bioRxiv
  year: '2026'
  doi: 10.64898/2026.07.28.741192
  url: https://doi.org/10.64898/2026.07.28.741192
repository: https://bioc.r-universe.dev
repository-code: https://github.com/C3BI-pasteur-fr/CyFj11
commit: ab0d40a4fca8f21a74e79a86f030866ef1a3e80f
url: https://github.com/C3BI-pasteur-fr/CyFj11
date-released: '2026-09-15'
contact:
- family-names: Jagla
  given-names: Bernd
  email: bernd.jagla@pasteur.fr
  orcid: https://orcid.org/0000-0002-7696-0484
  affiliation: Institut Pasteur