Package: CyFj11
Type: Package
Title: Parse FlowJo V11 Workspace Files and Export to FlowJo V10
Version: 0.99.113
Authors@R: c(
    person("Bernd",    "Jagla",
           email   = "bernd.jagla@pasteur.fr",
           role    = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7696-0484",
                       affiliation = "Institut Pasteur, scBiomarkers UTechS & Bioinformatics & Biostatistics Hub")),
    person("Slobodan", "Culina",
           email   = "Slobodan.culina@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS")),
    person("Francois", "Le Guerroue",
           email   = "francois.le-guerroue@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS")),
    person("Esma",     "Karkeni",
           email   = "esma.karkeni@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS")),
    person("Milena",   "Hasan",
           email   = "milena.hasan@pasteur.fr",
           role    = "aut",
           comment = c(affiliation = "Institut Pasteur, scBiomarkers UTechS"))
    )
Description: Provides functions to parse FlowJo v11 workspace files
        (.flowjo) and extract gating information, populations, and
        associated FCS files. Includes utilities for exporting data to
        FlowJo v10 workspace format. The package enables bidirectional
        data flow between FlowJo and R/Bioconductor, facilitating
        reproducible analysis workflows.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: jsonlite, dplyr, flowWorkspace, flowCore, readr, rlang,
        tibble, tidyr, xml2, methods, scales, magrittr, stats, utils
Suggests: testthat (>= 3.0.0), Biobase, CytoML, FlowSOM,
        flowWorkspaceData, ggcyto, knitr, mockery, BiocStyle, qpdf,
        rmarkdown
VignetteBuilder: knitr
biocViews: FlowCytometry, DataImport, Infrastructure, Preprocessing
URL: https://github.com/C3BI-pasteur-fr/CyFj11
BugReports: https://github.com/C3BI-pasteur-fr/CyFj11/issues
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.0
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-15 11:47:45 UTC
RemoteUrl: https://github.com/bioc/CyFj11
RemoteRef: HEAD
RemoteSha: ab0d40a4fca8f21a74e79a86f030866ef1a3e80f
NeedsCompilation: no
Packaged: 2026-10-09 09:22:33 UTC; root
Author: Bernd Jagla [aut, cre] (ORCID: <https://orcid.org/0000-0002-7696-0484>,
    affiliation: Institut Pasteur, scBiomarkers UTechS & Bioinformatics
    & Biostatistics Hub),
  Slobodan Culina [aut] (affiliation: Institut Pasteur, scBiomarkers
    UTechS),
  Francois Le Guerroue [aut] (affiliation: Institut Pasteur, scBiomarkers
    UTechS),
  Esma Karkeni [aut] (affiliation: Institut Pasteur, scBiomarkers UTechS),
  Milena Hasan [aut] (affiliation: Institut Pasteur, scBiomarkers UTechS)
Maintainer: Bernd Jagla <bernd.jagla@pasteur.fr>