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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CoreGx" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'CoreGx: Classes and Functions to Serve as the Basis for Other ''Gx'' Packages'
version: 2.9.0
abstract: 'A collection of functions and classes which serve as the foundation for
  our lab''s suite of R packages, such as ''PharmacoGx'' and ''RadioGx''. This package
  was created to abstract shared functionality from other lab package releases to
  increase ease of maintainability and reduce code repetition in current and future
  ''Gx'' suite programs. Major features include a ''CoreSet'' class, from which ''RadioSet''
  and ''PharmacoSet'' are derived, along with get and set methods for each respective
  slot. Additional functions related to fitting and plotting dose response curves,
  quantifying statistical correlation and calculating area under the curve (AUC) or
  survival fraction (SF) are included. For more details please see the included documentation,
  as well as: Smirnov, P., Safikhani, Z., El-Hachem, N., Wang, D., She, A., Olsen,
  C., Freeman, M., Selby, H., Gendoo, D., Grossman, P., Beck, A., Aerts, H., Lupien,
  M., Goldenberg, A. (2015) <https://doi.org/10.1093/bioinformatics/btv723>. Manem,
  V., Labie, M., Smirnov, P., Kofia, V., Freeman, M., Koritzinksy, M., Abazeed, M.,
  Haibe-Kains, B., Bratman, S. (2018) <https://doi.org/10.1101/449793>.'
authors:
- family-names: Joseph
  given-names: Jermiah
  email: jermiah.joseph@uhn.ca
- family-names: Smirnov
  given-names: Petr
  email: petr.smirnov@uhnresearch.ca
- family-names: Smith
  given-names: Ian
  email: ianc.smith@mail.utoronto.ca
- family-names: Eeles
  given-names: Christopher
  email: christopher.eeles@uhnresearch.ca
- family-names: Li
  given-names: Feifei
  email: ff.li@mail.utoronto.ca
- family-names: Haibe-Kains
  given-names: Benjamin
  email: benjamin.haibe.kains@utoronto.ca
preferred-citation:
  type: article
  title: 'PharmacoGx: an R package for analysis of large pharmacogenomic datasets'
  authors:
  - family-names: Smirnov
    given-names: P
  - family-names: Safikhani
    given-names: Z
  - family-names: El-Hachem
    given-names: 'N'
  - family-names: Wang
    given-names: D
  - family-names: She
    given-names: A
  - family-names: Olsen
    given-names: C
  - family-names: Freeman
    given-names: M
  - family-names: Selby
    given-names: H
  - family-names: Gendoo
    given-names: D
  - family-names: Grossman
    given-names: P
  - family-names: Beck
    given-names: A
  - family-names: Aerts
    given-names: H
  - family-names: Lupien
    given-names: M
  - family-names: Haibe-Kains
    given-names: A Goldenberg ,B
  journal: Bioinformatics (Oxford, England)
  year: '2016'
repository: https://bioc.r-universe.dev
date-released: '2024-03-11'
contact:
- family-names: Haibe-Kains
  given-names: Benjamin
  email: benjamin.haibe.kains@utoronto.ca