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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CorNetto" in publications use:'
type: software
license: Artistic-2.0
title: 'CorNetto: Knowledge-Guided Multi-Omic Correlation Network Analysis'
version: 0.99.1
doi: 10.64898/2026.07.14.26358048
abstract: Builds knowledge-guided multi-omic correlation networks from normalized
  transcriptomic, proteomic, and metabolomic abundance data. Group-specific correlation
  networks are compared with the Fisher z-difference test, either across all within-omic
  pairs in one or every assay without generating cross-omic pairs, or across candidate
  edges supplied by a prior-knowledge network, and the resulting differential network
  is summarized into node-level rewiring scores that identify features whose interaction
  patterns change between groups. Rewiring scores can be compared with group-label
  permutation reference distributions, and networks can be restricted to pathway-focused
  neighbourhoods, converted to 'igraph' objects, or exported as Cytoscape-ready node
  and edge tables. The package is built on Bioconductor containers so that multi-omic
  assays and sample metadata are managed consistently throughout the workflow.
authors:
- family-names: Ward
  given-names: Bradley
  email: bradleyalexward@gmail.com
  orcid: https://orcid.org/0000-0003-0778-0153
preferred-citation:
  type: article
  title: Longitudinal multi-omic network rewiring at the complement-coagulation interface
    in post-acute sequelae of COVID-19 (PASC)
  authors:
  - family-names: Ward
    given-names: Bradley
    email: bradleyalexward@gmail.com
    orcid: https://orcid.org/0000-0003-0778-0153
  - family-names: Balligand
    given-names: Jean-Luc
  - family-names: Bamps
    given-names: Laurence
  - family-names: Bommer
    given-names: Guido
  - family-names: Cani
    given-names: Patrice D.
  - family-names: De Greef
    given-names: Julien
  - family-names: Dewulf
    given-names: Joseph P.
  - family-names: Gatto
    given-names: Laurent
  - family-names: Haufroid
    given-names: Vincent
  - family-names: Kabamba
    given-names: Benoît
  - family-names: Ruys
    given-names: Sébastien
    name-particle: Pyr dit
  - family-names: Vertommen
    given-names: Didier
  - family-names: Yombi
    given-names: Jean Cyr
  - family-names: Belkhir
    given-names: Leïla
  - family-names: Elens
    given-names: Laure
  journal: medRxiv
  year: '2026'
  doi: 10.64898/2026.07.14.26358048
repository: https://bioc.r-universe.dev
repository-code: https://github.com/bradleyalexward/CorNetto
commit: 20ca097f7480bb0dfc0c6f56f6ac16aaccc089af
url: https://github.com/bradleyalexward/CorNetto
date-released: '2026-08-25'
contact:
- family-names: Ward
  given-names: Bradley
  email: bradleyalexward@gmail.com
  orcid: https://orcid.org/0000-0003-0778-0153