Package: Cogito
Type: Package
Title: Compare genomic intervals tool - Automated, complete,
        reproducible and clear report about genomic and epigenomic data
        sets
Version: 1.19.0
Date: 2025-07-28
Authors@R: person("Annika", "Bürger", email="a.buerger@uni-muenster.de",
    role=c("cre", "aut"))
Description: Biological studies often consist of multiple conditions
        which are examined with different laboratory set ups like
        RNA-sequencing or ChIP-sequencing. To get an overview about the
        whole resulting data set, Cogito provides an automated,
        complete, reproducible and clear report about all samples and
        basic comparisons between all different samples. This report
        can be used as documentation about the data set or as starting
        point for further custom analysis.
License: LGPL-3
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 4.1), GenomicRanges, jsonlite, GenomicFeatures, entropy
Imports: BiocManager, rmarkdown, Seqinfo, S4Vectors, AnnotationDbi,
        graphics, stats, utils, methods, magrittr, ggplot2,
        TxDb.Mmusculus.UCSC.mm9.knownGene
biocViews: FunctionalGenomics, GeneRegulation, Software, Sequencing
Suggests: BiocStyle, knitr, markdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Config/pak/sysreqs: cmake make libbz2-dev liblzma-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:13 UTC
RemoteUrl: https://github.com/bioc/Cogito
RemoteRef: HEAD
RemoteSha: afc4838f5f73b03f16f480eb1eb7b9260a26e364
Packaged: 2026-07-03 17:17:30 UTC; root
Author: Annika Bürger [cre, aut]
Maintainer: Annika Bürger <a.buerger@uni-muenster.de>