# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "CoGAPS" in publications use:'
type: software
license: BSD-3-Clause
title: 'CoGAPS: Coordinated Gene Activity in Pattern Sets'
version: 3.25.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CoGAPS
abstract: Coordinated Gene Activity in Pattern Sets (CoGAPS) implements a Bayesian
  MCMC matrix factorization algorithm, GAPS, and links it to gene set statistic methods
  to infer biological process activity. It can be used to perform sparse matrix factorization
  on any data, and when this data represents biomolecules, to do gene set analysis.
authors:
- family-names: Johnson
  given-names: Jeanette
  email: ejfertig@jhmi.edu
- family-names: Tsang
  given-names: Ashley
- family-names: Mitchell
  given-names: Jacob
- family-names: Sherman
  given-names: Thomas
- family-names: Lee
  given-names: Wai-shing
- family-names: Kelton
  given-names: Conor
- family-names: Maxian
  given-names: Ondrej
- family-names: Carey
  given-names: Jacob
- family-names: Stein-O'Brien
  given-names: Genevieve
- family-names: Considine
  given-names: Michael
- family-names: Wodicka
  given-names: Maggie
- family-names: Stansfield
  given-names: John
- family-names: Sivy
  given-names: Shawn
- family-names: Colantuoni
  given-names: Carlo
- family-names: Favorov
  given-names: Alexander
- family-names: Ochs
  given-names: Mike
- family-names: Fertig
  given-names: Elana
preferred-citation:
  type: article
  title: 'CoGAPS: an integrated R/C++ package to identify overlapping patterns of
    activation of biological processes from expression data'
  authors:
  - family-names: Fertig
    given-names: Elana J.
  - family-names: Ding
    given-names: Jie
  - family-names: Favorov
    given-names: Alexander V.
  - family-names: Parmigiani
    given-names: Giovanni
  - family-names: Ochs
    given-names: Michael F.
  year: '2010'
  journal: Bioinformatics
  volume: '26'
  issue: '21'
  start: '2792'
  end: '2793'
repository: https://bioc.r-universe.dev
commit: 3d187e2de0e3b322fc366497b0e30d47c276957b
date-released: '2024-06-05'
contact:
- family-names: Johnson
  given-names: Jeanette
  email: ejfertig@jhmi.edu