Changes in version 1.9.25 o move from CRAN's blaster to Bioconductors rBLAST Changes in version 1.9.17 o quantiative comparison community abundance with normalized rank abundance distributions (NRADs) implemented in get_nrad() Changes in version 1.9.10 o bigfixes in joint graph building * when clustering both CDR3a/CDR3b, CDR3b edges between-repertoires got deleted * one between-repertoire edge between two clones with double edges was deleted Changes in version 1.9.9 o get_blosum() bugfix -> identical CDR3 did not form edges in certain cases o added test-get_blosum.R Changes in version 1.9.2 o K-nearest-neighbor approximation implemented o get_cosine_similarity to compare community abundance overlap Changes in version 1.7.7 o Bugfix, model improvement Changes in version 1.7.3 o Function for quantifying community purity wrt node features Changes in version 1.5.41 o Function for community inspection/decoding Changes in version 1.5.36 o Two function for visualization of results: get_honeycombs and get_beta_violins Changes in version 1.3.34 o Stable version but not tested Changes in version 1.3.25 o Major changes since this version including * community detection * Stan model-based differential community occupancy * supporting functions Changes in version 1.3.20 o Future based parallelization in clustering and graphing Changes in version 1.3.1 o Stub functions for integration of data from VDJdb, TCR3d and MCPAS-TCR Changes in version 1.1.10 o New global clustering solution Changes in version 0.99.28-29 o Accepted in Bioconductor Chainges in version 1.1.5 (20 Dec, 2023) o New graph generating and plotting functions Changes in version 0.99.20-0.99.26 o Functions added for: graph building, joining, plotting o S4 object accessors added Changes in version 0.99.16 o Changes after first round of review done o Now we have two versions (old version=1 removed, unused) o S4 object output of clust_irr Changes in version 0.99.4 o Build errors/warnings fixed Changes in version 0.99.0 o Submitted to Bioconductor