Changes in version 1.3.1 o fixed bug in mergeMS2spectra when used with external peaktable Changes in version 0.99.13 o changed download instructions to BiocManager::install() Changes in version 0.99.12 o Bioconductor review II: R, part three o added MS2spectrum methods for MSnbase/ProtGenerics generics o minor code changes with no visible effect for users Changes in version 0.99.11 o fixed bug in new distanceMatrix(), now coerces numeric IDs to character Changes in version 0.99.10 o Bioconductor review II: R, part two o replaced nested for-loop inside distanceMatrix() Changes in version 0.99.9 o Bioconductor review II: R, part one o provided all 'type' argument options as vector o added '...' argument to specplot() o changed function to convert MSnbase objects from 'convertSpectrum(x)' to 'as.MS2spectrum(x)' / 'as(x, "MS2spectrum")' o various minor code changes with no visible effect for users Changes in version 0.99.8 o Bioconductor review I: DESCRIPTION and NAMESPACE o added URL and BugReports to DESCRIPTION o started importing all packages into NAMESPACE o abandoned "CluMSID_" prefix and renamed respective functions o changed all function names to camel case starting with lower case letters Changes in version 0.99.7 o further reduced size of vignettes Changes in version 0.99.6 o bugfix in MTBLS vignette Changes in version 0.99.5 o modified data import for CluMSID MTBLS vignette Changes in version 0.99.4 o reduced size of vignettes Changes in version 0.99.3 o added missing dependency for is() Changes in version 0.99.2 o started avoiding class() function to check for class o minor code style change Changes in version 0.99.1 o removed .RHistory o changed import for "show" o removed invalid character from GC_post.csv in CluMSIDdata which caused errors on Linux and OS X Changes in version 0.99.0 o Bioconductor submission Changes in version 0.1.14 o deleted inst/extdata (now in CluMSIDdata) Changes in version 0.1.13 o updated R version dependency to 3.6 o code style changes Changes in version 0.1.12 o updated vignette dependencies Changes in version 0.1.11 o added missing Suggests o updated documentation and GC-EI-MS vignette Changes in version 0.1.10 o added splitPolarities() function o added specplot() function Changes in version 0.1.9 o Featurelist() and writeFeaturelist() now also work with lists of 'pseudospectrum' objects o bugfix for intensity extraction in extractPseudospectra() o tutorial update Changes in version 0.1.8 o added "..." to CluMSID_MDSplot(), CluMSID_HCplot(), CluMSID_OPTICSplot() to allow for customisation of plot appearance Changes in version 0.1.7 o added polarity slot to 'MS2spectrum' class and respective show() generic o added polarity accessor o added extraction of polarity information from raw data to extractMS2spectra() Changes in version 0.1.6 o added a NEWS file o added "tolerance" argument for m/z tolerance to cossim() and distanceMatrix() o added accessor functions for "MS2spectrum" and "pseudospectrum" objects o added runnable examples for all exported functions o some formatting and style changes