Package: Chicago
Type: Package
Title: CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Version: 1.41.0
Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett,
        Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk>
Description: A pipeline for analysing Capture Hi-C data.
License: Artistic-2.0
Depends: R (>= 3.3.1), data.table
Imports: matrixStats, MASS, Hmisc, Delaporte, methods, grDevices,
        graphics, stats, utils
Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat,
        GenomeInfoDb, Rsamtools, GenomicInteractions, GenomicRanges,
        IRanges, AnnotationHub
VignetteBuilder: knitr
biocViews: Epigenetics, HiC, Sequencing, Software
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:42:13 UTC
RemoteUrl: https://github.com/bioc/Chicago
RemoteRef: HEAD
RemoteSha: 2e8e18aae47178ab78e13c6cf1a744703aae0357
NeedsCompilation: no
Packaged: 2026-07-12 05:58:30 UTC; root