Please cite Q. Wang (2022) or G. Yu (2015) for using ChIPseeker. In addition, please cite clusterProfiler/DOSE/ReactomePA when using functional enrichment analyses.

Qianwen Wang, Ming Li, Tianzhi Wu, Li Zhan, Lin Li, Meijun Chen, Wenqin Xie, Zijing Xie, Erqiang Hu, Shuangbin Xu, Guangchuang Yu. Exploring epigenomic datasets by ChIPseeker. Current Protocols 2022, 2(10): e585

Guangchuang Yu, LiGen Wang, and QingYu He. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. Bioinformatics 2015, 31(14):23822383

Corresponding BibTeX entries:

  @Article{,
    title = {Exploring epigenomic datasets by ChIPseeker},
    author = {Qianwen Wang and Ming Li and Tianzhi Wu and Li Zhan and
      Lin Li and Meijun Chen and Wenqin Xie and Zijing Xie and Erqiang
      Hu and Shuangbin Xu and Guangchuang Yu},
    journal = {Current Protocols},
    year = {2022},
    volume = {2},
    number = {10},
    pages = {e585},
    pmid = {36286622},
    doi = {10.1002/cpz1.585},
    url =
      {https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585},
  }

  @Article{,
    title = {ChIPseeker: an R/Bioconductor package for ChIP peak
      annotation, comparison and visualization},
    author = {Guangchuang Yu and Li-Gen Wang and Qing-Yu He},
    journal = {Bioinformatics},
    year = {2015},
    volume = {31},
    number = {14},
    pages = {2382-2383},
    pmid = {25765347},
    doi = {10.1093/bioinformatics/btv145},
  }