# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ChAMP" in publications use:'
type: software
license: GPL-3.0-only
title: 'ChAMP: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450
  and EPIC'
version: 2.35.0
doi: 10.1093/bioinformatics/btx513
abstract: The package includes quality control metrics, a selection of normalization
  methods and novel methods to identify differentially methylated regions and to highlight
  copy number alterations.
authors:
- family-names: Yuan
  given-names: Tian
  email: champ450k@gmail.com
preferred-citation:
  type: article
  title: 'ChAMP: updated methylation analysis pipeline for Illumina BeadChips'
  authors:
  - family-names: Tian
    given-names: Yuan
  - family-names: Morris
    given-names: Tiffany J.
  - family-names: Webster
    given-names: Amy P.
  - family-names: Yang
    given-names: Zhen
  - family-names: Beck
    given-names: Stephan
  - family-names: Andrew
    given-names: Feber
  - family-names: Teschendorff
    given-names: Andrew E.
  year: '2017'
  journal: Bioinformatics
  issue: '3'
  doi: 10.1093/bioinformatics/btx513
  start: btx513
repository: https://bioc.r-universe.dev
date-released: '2020-11-02'
contact:
- family-names: Yuan
  given-names: Tian
  email: champ450k@gmail.com
references:
- type: article
  title: 'ChAMP: 450k Chip Analysis Methylation Pipeline'
  authors:
  - family-names: Morris
    given-names: Tiffany J.
  - family-names: Butcher
    given-names: Lee M.
  - family-names: Teschendorff
    given-names: Andrew E.
  - family-names: Chakravarthy
    given-names: Ankur R.
  - family-names: Wojdacz
    given-names: Tomasz K.
  - family-names: Beck
    given-names: Stephan
  year: '2014'
  journal: Bioinformatics
  volume: '30'
  issue: '3'
  doi: 10.1093/bioinformatics/btt684
  start: 428-430
- type: article
  title: 'Probe Lasso: A novel method to rope in differentially methylated regions
    with 450K DNA methylation data'
  authors:
  - family-names: Butcher
    given-names: Lee M.
  - family-names: Beck
    given-names: Stephan
  journal: Methods
  year: '2015'
  volume: '72'
  doi: 10.1016%2Fj.ymeth.2014.10.036
  start: 21-28