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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CellNOptR" in publications use:'
type: software
license: GPL-3.0-only
title: 'CellNOptR: Training of boolean logic models of signalling networks using prior
  knowledge networks and perturbation data'
version: 1.51.0
abstract: This package does optimisation of boolean logic networks of signalling pathways
  based on a previous knowledge network and a set of data upon perturbation of the
  nodes in the network.
authors:
- family-names: Cokelaer
  given-names: Thomas
- family-names: Eduati
  given-names: Federica
- family-names: MacNamara
  given-names: Aidan
- family-names: Terfve
  given-names: Camille
- family-names: Gabor
  given-names: Attila
  email: attila.gabor@uni-heidelberg.de
preferred-citation:
  type: article
  title: 'CellNOptR: a flexible toolkit to train protein signaling networks to data
    using multiple logic formalisms.'
  authors:
  - family-names: Terfve
    given-names: Camille
  - family-names: Cokelaer
    given-names: Thomas
  - family-names: MacNamara
    given-names: Aidan
  - family-names: Henriques
    given-names: David
  - family-names: Goncalves
    given-names: Emanuel
  - family-names: Morris
    given-names: Melody K
  - family-names: Iersel
    given-names: Martin
    name-particle: van
  - family-names: Lauffenburger
    given-names: Douglas A
  - family-names: Saez-Rodriguez
    given-names: Julio
  year: '2012'
  journal: BMC Systems Biology
  volume: '1'
  issue: '133'
repository: https://bioc.r-universe.dev
date-released: '2022-03-16'
contact:
- family-names: Gabor
  given-names: Attila
  email: attila.gabor@uni-heidelberg.de
references:
- type: manual
  title: Training of boolean logic models of signalling networks using prior knowledge
    networks and perturbation data
  authors:
  - family-names: Terfve
    given-names: Camille
  - family-names: Cokelaer
    given-names: Thomas
  - family-names: MacNamara
    given-names: Aidan
  - family-names: Saez-Rodriguez
    given-names: Julio
  year: '2022'
  version: 1.51.0
  notes: R package available on http://www.bioconductor.org/packages/release/bioc/html/CellNOptR.html