To cite the package CellNOptR in publications please use:

C Terfve, T Cokelaer, A MacNamara, D Henriques, E Goncalves, MK Morris, M van Iersel, DA Lauffenburger, J Saez-Rodriguez. CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Systems Biology, 2012, 6:133

Camille Terfve, Thomas Cokelaer, Aidan MacNamara, Julio Saez-Rodriguez. Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data (2022)R package version 1.59.0

Corresponding BibTeX entries:

  @Article{,
    title = {CellNOptR: a flexible toolkit to train protein signaling
      networks to data using multiple logic formalisms.},
    author = {Camille Terfve and Thomas Cokelaer and Aidan MacNamara
      and David Henriques and Emanuel Goncalves and Melody K Morris and
      Martin {van Iersel} and Douglas A Lauffenburger and Julio
      Saez-Rodriguez},
    year = {2012},
    journal = {BMC Systems Biology},
    volume = {1},
    number = {133},
  }

  @Manual{,
    title = {Training of boolean logic models of signalling networks
      using prior knowledge networks and perturbation data},
    author = {Camille Terfve and Thomas Cokelaer and Aidan MacNamara
      and Julio Saez-Rodriguez},
    year = {2022},
    version = {1.59.0},
    note = {R package available on
      http://www.bioconductor.org/packages/release/bioc/html/CellNOptR.html},
  }