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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CellBarcode" in publications use:'
type: software
license: Artistic-2.0
title: 'CellBarcode: Cellular DNA Barcode Analysis toolkit'
version: 1.11.0
doi: 10.1038/s43588-024-00595-7
abstract: The package CellBarcode performs Cellular DNA Barcode analysis. It can handle
  all kinds of DNA barcodes, as long as the barcode is within a single sequencing
  read and has a pattern that can be matched by a regular expression. \codeCellBarcode
  can handle barcodes with flexible lengths, with or without UMI (unique molecular
  identifier). This tool also can be used for pre-processing some amplicon data such
  as CRISPR gRNA screening, immune repertoire sequencing, and metagenome data.
authors:
- family-names: Sun
  given-names: Wenjie
  email: sunwjie@gmail.com
  orcid: https://orcid.org/0000-0002-3100-2346
- family-names: Lyne
  given-names: Anne-Marie
  email: Anne-Marie.Lyne@curie.fr
- family-names: Perie
  given-names: Leila
  email: leila.perie@curie.fr
preferred-citation:
  type: article
  title: Extracting, Filtering and Simulating Cellular Barcodes Using CellBarcode
    Tools
  authors:
  - family-names: Sun
    given-names: Wenjie
    email: sunwjie@gmail.com
    orcid: https://orcid.org/0000-0002-3100-2346
  - family-names: Perkins
    given-names: Meghan
  - family-names: Huyghe
    given-names: Mathilde
  - family-names: Faraldo
    given-names: Marisa M.
  - family-names: Fre
    given-names: Silvia
  - family-names: Perié
    given-names: Leïla
  - family-names: Lyne
    given-names: Anne-Marie
    email: Anne-Marie.Lyne@curie.fr
  journal: Nature Computational Science
  year: '2024'
  month: '2'
  doi: 10.1038/s43588-024-00595-7
  url: https://doi.org/10.1038/s43588-024-00595-7
  start: 1-16
repository: https://bioc.r-universe.dev
repository-code: https://github.com/wenjie1991/CellBarcode
url: https://wenjie1991.github.io/CellBarcode/
contact:
- family-names: Sun
  given-names: Wenjie
  email: sunwjie@gmail.com
  orcid: https://orcid.org/0000-0002-3100-2346