NEWS
CatsCradle 1.3.3
- Example data ligandReceptorResults.rda saved in compressed format.
CatsCradle 1.3.2
- Function getLigandReceptorPairsInPanel rewritten for faster runtime.
- Analytical option to calculate pvalues added to computeNeighbourEnrichment.
This has a faster runtime.
- Function performLigandReceptorAnalysis rewritten for faster runtime by
making use of sparse matrices.
- Analytical option to calculate pvalues added to performLigandReceptorAnalysis.
This has a faster runtime.
- Function plotLRDotplot added to visualise ligand-receptor interactions returned
by performLigandReceptorAnalysis.
CatsCradle 1.3.1
- smallXenium@images$fov@misc = list() field added to smallXenium example
data for compatability with Seurat updates.
CatsCradle 1.1.2
- Function getSubsetComponents added. This is designed to dectect the
components of a gene subset in the case where median complement distance
detects clustering.
- Function edgeLengthsAndCellTypePairs rewritten for faster runtime.
CatsCradle 1.1.1
- Default behaviour of nbhdsAsEdgesToNbhdsAsList changed to exclude
self. This fixes a bug leading to inflated values of MoransI.
CatsCradle 0.99.10
- We have now broken out our code into files pertaining to different
areas of functionality.
- We have improved functionality for
handling SingleCellExperiment and SpatialExperiment objects.
- CatsCradle is currently under review at Bioconductor. Watch this
space.