Changes in version 0.99.6                        

  - Seed the demonstration-data helpers with withr::with_seed() instead
    of set.seed() so there is no set.seed() call in package code (clears
    the BiocCheck warning), and tidy the related notes.

                       Changes in version 0.99.5                        

  - New makeDemoSE() builds the vignette's demonstration
    SummarizedExperiment in one call, carrying the derived
    differential-expression table and the per-cohort paired t-test
    p-values in its metadata(), so the vignette no longer constructs
    data inline.
  - New makeBeeswarmDemo() returns a dense single-feature object for
    showing a sina / beeswarm overlay at scale.
  - cxboxplot() gains points ("all", "sina", "jitter", "none") to pack
    the observations into a beeswarm that stays legible with many
    points.
  - cxsurvival() gains tooltip to carry extra colData columns, so
    hovering a step or a censored observation shows that subject's
    metadata.
  - Vignette: build the dataset with makeDemoSE(); document the enriched
    cell hover and the view-reset control on the heatmap; surface
    per-subject metadata, the censored-observation rug and the risk
    table on the Kaplan-Meier curve; and add a beeswarm-at-scale
    example.

                       Changes in version 0.99.4                        

  - Fix cxvolcano(): the result matrix was transposed, so every gene
    collapsed onto two plotted points. Genes are now the variables and
    the fold-change / p-value are the axis columns, giving one point per
    gene.
  - cxvolcano() now colours points by regulation (up / down / not
    significant), draws the fold-change and p-value threshold lines, and
    gains label, label_genes, label_fc and label_p to label significant
    or named genes.
  - cxplot() gains overlays, var_overlays and cluster to draw colData /
    rowData annotations as overlay tracks and to cluster rows and
    columns.
  - New cxsurvival() draws a Kaplan-Meier curve from colData.
  - New cxboxplot() draws a paired boxplot of one feature with
    per-subject connecting lines, faceting and colouring from colData.
  - Rewrote the vignette around a single SummarizedExperiment shown as a
    heatmap, volcano, Kaplan-Meier curve and paired boxplot, and added a
    section motivating the package relative to existing Bioconductor
    visualization tools.

                       Changes in version 0.99.3                        

  - Version bump to re-run the Bioconductor staging build (no code
    changes; 0.99.2 built and passed checks but failed to publish).

                       Changes in version 0.99.2                        

  - Vignette charts now render in the built HTML: require canvasXpress
    (>= 1.70.3), which ships a CanvasXpress library that BiocStyle's
    self-contained HTML post-processing no longer corrupts (earlier
    versions were mangled on inlining, leaving the widgets blank).
    Verified by rendering the vignette against the CRAN 1.70.3 library.

                       Changes in version 0.99.1                        

  - Add maintainer ORCID iD to Authors@R (BiocCheck note).

                       Changes in version 0.99.0                        

  - Initial submission to Bioconductor.
  - cxplot() generic renders a SummarizedExperiment (and extending
    classes such as SingleCellExperiment and DESeqDataSet) as an
    interactive CanvasXpress heatmap, with colData as sample annotations
    and rowData as feature annotations. n= keeps only the most variable
    features.
  - cxvolcano() draws a volcano plot from a differential-expression
    result table (DESeqResults, limma::topTable(), or a data frame).