Package: CSAR
Type: Package
Title: Statistical tools for the analysis of ChIP-seq data
Version: 1.65.1
Date: 2025-07-24
Author: Jose M Muino
Description: Statistical tools for ChIP-seq data analysis. The package
        includes the statistical method described in Kaufmann et al.
        (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average
        DNA fragment size subjected to sequencing into account, the
        software calculates genomic single-nucleotide read-enrichment
        values. After normalization, sample and control are compared
        using a test based on the Poisson distribution. Test statistic
        thresholds to control the false discovery rate are obtained
        through random permutation.
Depends: R (>= 2.15.0), S4Vectors, IRanges, Seqinfo, GenomicRanges
Maintainer: Jose M Muino <jose.muino@live.com>
Suggests: ShortRead, Biostrings
Imports: stats, utils
License: Artistic-2.0
LazyLoad: yes
LazyData: yes
biocViews: ChIPSeq, Transcription, Genetics
PackageStatus: Deprecated
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-12 14:25:20 UTC
RemoteUrl: https://github.com/bioc/CSAR
RemoteRef: HEAD
RemoteSha: 67bdf02be5b305f28ec2187d817b1592f6613368
NeedsCompilation: yes
Packaged: 2026-07-12 09:25:18 UTC; root