Package: CRImage
Type: Package
Title: CRImage a package to classify cells and calculate tumour
        cellularity
Version: 1.61.0
Date: 2012-10-01
Author: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
        <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda
        <oscar.rueda@cancer.org.uk>, Florian Markowetz
        <Florian.Markowetz@cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
 <Yinyin.Yuan@cancer.org.uk>
Description: CRImage provides functionality to process and analyze
        images, in particular to classify cells in biological images.
        Furthermore, in the context of tumor images, it provides
        functionality to calculate tumour cellularity.
License: Artistic-2.0
LazyLoad: yes
Imports: MASS, e1071, foreach, sgeostat
Depends: EBImage, DNAcopy, aCGH
Collate: plotCorrectedCN.R correctCopyNumber.R writeDensityImage.R
        convertRGBToHSV.R convertHSVToRGB.R imageCompression.R
        createBinaryImage.R colorCorrection.R searchStructures.R
        segmentStructures.R classifyStructures.R numberOfNeighbors.R
        segmentCytoplasma.R segmentImage.R createClassifier.R
        kernelSmoother.R paintCells.R classifyCells.R
        determineCellularity.R calculateCellularity.R findSlices.R
        parseFinalScan.R classificationAperio.R processAperio.R
        Phansalkar_threshold.R SauvolaThreshold.R
        calculateMeanStdTarget.R convertLABToRGB.R convertRGBToLAB.R
        localORThreshold.R oregonThreshold.R localThreshold.R
        calculateOtsu.R classifyPen.R getImageDistance.R hist3d.R
        labelCells.R plotImage.R
biocViews: CellBiology, Classification
Packaged: 2026-07-17 05:00:26 UTC; root
Config/pak/sysreqs: cmake libfftw3-dev make libjpeg-dev libpng-dev
        libtiff-dev libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:34:54 UTC
RemoteUrl: https://github.com/bioc/CRImage
RemoteRef: HEAD
RemoteSha: 1d64e666d244f6cab8ae13ba7cc45dde6c8c1424
NeedsCompilation: no