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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CONCERTDR" in publications use:'
type: software
license: MIT
title: 'CONCERTDR: Drug Response Data Analysis Using CMap Database'
version: 0.99.2
doi: 10.32614/CRAN.package.CONCERTDR
abstract: Provides a complete pipeline for drug repurposing analysis using the Connectivity
  Map (CMap) L1000 database. Functionality includes database subsetting, reference
  profile extraction from GCTX files, signature matching via Kolmogorov-Smirnov, GSEA-based,
  cosine similarity, and other methods, result annotation against CMap compound metadata,
  z-score matrix extraction, and publication-quality clustermap visualization via
  ComplexHeatmap. Connectivity scoring methods (KS, GSEA, XCos, XSum, Zhang) are implemented
  internally based on the algorithms described in Lamb et al. (2006), Subramanian
  et al. (2005), Cheng et al. (2014), and Zhang & Gant (2008), removing the need for
  external GitHub-only dependencies.
authors:
- family-names: Pan
  given-names: Hengxin
  email: pan.h@wehi.edu.au
  orcid: https://orcid.org/0009-0004-1274-1612
- family-names: Tan
  given-names: Chin Wee
  email: cwtan@wehi.edu.au
  orcid: https://orcid.org/0000-0001-9695-7218
- family-names: Abraham
  given-names: Gad
- family-names: Davidson
  given-names: Nadia
  email: davidson.n@wehi.edu.au
  orcid: https://orcid.org/0000-0002-8461-7467
repository: https://bioc.r-universe.dev
repository-code: https://github.com/DavidsonGroup/CONCERTDR
commit: d27d37cc7cfff088069a80ddad5482a20923cc08
url: https://github.com/DavidsonGroup/CONCERTDR
date-released: '2026-08-13'
contact:
- family-names: Pan
  given-names: Hengxin
  email: pan.h@wehi.edu.au
  orcid: https://orcid.org/0009-0004-1274-1612