Package: CNVfilteR
Type: Package
Title: Identifies false positives of CNV calling tools by using SNV
        calls
Version: 1.27.0
Authors@R: 
    c(person(
        given = "Jose Marcos",
        family = "Moreno-Cabrera",
        role = c("aut", "cre"),
        email = "jpuntomarcos@gmail.com",
        comment = c(ORCID = "0000-0001-8570-0345")
    ), person(
        given = "Bernat",
        family = "Gel",
        role = "aut"
    ))
Description: CNVfilteR identifies those CNVs that can be discarded by
        using the single nucleotide variant (SNV) calls that are
        usually obtained in common NGS pipelines.
License: Artistic-2.0
URL: https://github.com/jpuntomarcos/CNVfilteR
Encoding: UTF-8
RoxygenNote: 7.1.1
Depends: R (>= 4.3)
Imports: IRanges, GenomicRanges, SummarizedExperiment, pracma,
        regioneR, assertthat, karyoploteR, CopyNumberPlots, graphics,
        utils, VariantAnnotation, Rsamtools, GenomeInfoDb, Biostrings,
        methods
Suggests: knitr, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Hsapiens.UCSC.hg19.masked, rmarkdown
biocViews: CopyNumberVariation, Sequencing, DNASeq, Visualization,
        DataImport
VignetteBuilder: knitr
BugReports: https://github.com/jpuntomarcos/CNVfilteR/issues
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:51:07 UTC
RemoteUrl: https://github.com/bioc/CNVfilteR
RemoteRef: HEAD
RemoteSha: e829c8310c8f8d0bb89b7ba48495c530604cfd56
NeedsCompilation: no
Packaged: 2026-06-10 18:51:38 UTC; root
Author: Jose Marcos Moreno-Cabrera [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8570-0345>),
  Bernat Gel [aut]
Maintainer: Jose Marcos Moreno-Cabrera <jpuntomarcos@gmail.com>