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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CNVMetrics" in publications use:'
type: software
license: Artistic-2.0
title: 'CNVMetrics: Copy Number Variant Metrics'
version: 1.9.0
doi: 10.7490/f1000research.1118704.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CNVMetrics
abstract: The CNVMetrics package calculates similarity metrics to facilitate copy
  number variant comparison among samples and/or methods. Similarity metrics can be
  employed to compare CNV profiles of genetically unrelated samples as well as those
  with a common genetic background. Some metrics are based on the shared amplified/deleted
  regions while other metrics rely on the level of amplification/deletion. The data
  type used as input is a plain text file containing the genomic position of the copy
  number variations, as well as the status and/or the log2 ratio values. Finally,
  a visualization tool is provided to explore resulting metrics.
authors:
- family-names: Deschênes
  given-names: Astrid
  email: adeschen@hotmail.com
  orcid: https://orcid.org/0000-0001-7846-6749
- family-names: Belleau
  given-names: Pascal
  email: pascal_belleau@hotmail.com
  orcid: https://orcid.org/0000-0002-0802-1071
- family-names: Tuveson
  given-names: David A.
  email: dtuveson@cshl.edu
  orcid: https://orcid.org/0000-0002-8017-2712
- family-names: Krasnitz
  given-names: Alexander
  email: krasnitz@cshl.edu
preferred-citation:
  type: manual
  title: 'CNVMetrics package: Quantifying similarity between copy number profiles
    [version 1; not peer reviewed]'
  authors:
  - family-names: Belleau
    given-names: Pascal
    email: pascal_belleau@hotmail.com
    orcid: https://orcid.org/0000-0002-0802-1071
  - family-names: Deschênes
    given-names: Astrid
    email: adeschen@hotmail.com
    orcid: https://orcid.org/0000-0001-7846-6749
  - family-names: Beyaz
    given-names: Semir
  - family-names: Tuveson
    given-names: David A.
    email: dtuveson@cshl.edu
    orcid: https://orcid.org/0000-0002-8017-2712
  - family-names: Krasnitz
    given-names: Alex
  year: '2021'
  volume: '10'
  journal: F1000Research
  doi: 10.7490/f1000research.1118704.1
  url: https://doi.org/10.7490/f1000research.1118704.1
  start: 737 (slides)
repository: https://bioc.r-universe.dev
repository-code: https://github.com/krasnitzlab/CNVMetrics
commit: 436b355bfd96e25dc2b8fc317ace3ba7932dfeee
url: https://krasnitzlab.github.io/CNVMetrics/
date-released: '2021-11-23'
contact:
- family-names: Deschênes
  given-names: Astrid
  email: adeschen@hotmail.com
  orcid: https://orcid.org/0000-0001-7846-6749
references:
- type: manual
  title: Quantifying similarity between copy number profiles with CNVMetrics package
    [version 1; not peer reviewed]
  authors:
  - family-names: Deschênes
    given-names: Astrid
  - family-names: Belleau
    given-names: Pascal
  - family-names: Tuveson
    given-names: David A.
  - family-names: Krasnitz
    given-names: Alex
  year: '2022'
  volume: '11'
  journal: F1000Research
  doi: 10.7490/f1000research.1119043.1
  url: https://doi.org/10.7490/f1000research.1119043.1
  start: 816 (poster)