NEWS

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CNORfuzzy 1.4.0

• cSimulator handles non integers values for the ihibitors and stimuli

• gaDiscreteT1.R: fix issue when only 1 model was returned within tolerance

• reduceFuzzy.R fix bug that causes seg faut (model was not cut properly)

• defaultParametersFuzzy.R: added nTF to set number of TF to arbitrary value (not tested)

• CNORwrapFuzzy.R: fixed pMutation argument that was not populated

• gaDiscrete functions return best score as well in the dataframe.

• output names of the fields returned by gaDiscrete are now using camel lower case so that plotFit from CellNoptR can be used

• add C simulator

CNORfuzzy 0.99.8

• add NEWS.Rd in inst/

• move tests in inst/unitTests/

CNORfuzzy 0.99.7

• USE CNOlist class from CellNOptR

CNORfuzzy 0.99.6

• REFACTORING

  • emove indexList and simList where possible.

  • use preprocessing function inside CNORwrapFuzzy

  • CNOList argument renamed in CNOlist

• CODE

  • add hashtable in gaDiscrete useful for small model.

CNORfuzzy 0.99.5

• UNIFORMISATION of NAMES/ARGUMENTS

  • made after the same uniformisation was done in CellNOptR 1.3.19

  • Update manual/vignettes accordingly

CNORfuzzy 0.99.4

• add computeScoreFuzzy function.

CNORfuzzy 0.99.3

• complete vignette.

CNORfuzzy 0.99.1

• complete manual

CNORfuzzy 0.99.0

• SIGNIFICANT USER-VISIBLE CHANGES

  • CNORwrapFuzzy is the main user interface function.

  • Tutorial completed

• NEW FEATURES

  • parameters of the optimisation procedure in getRefinedModel can be set by the user

  • defaultParametersFuzzy ease the creation of a structure to handle all the parameters

  • removed readMIDAS and makeCNOlist, which are now called directly from CellNOptR. Similarly, prep4simFuzzy calls CellNOptR prep4sim instead of rewritting it.