NEWS

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CNAnorm 1.13.1

• chromosome does not start from 1

CNAnorm 1.9.2

• Added function CNAnormWorkflow Added window weighting (for segmentation) depending on dispersion. Fixed a bug that made plotGenome crash if the interval of interest had no valid values. Changed vignette to better reflect typical usage and defined basic and advanced use.

CNAnorm 1.7.1

CNAnorm 1.3.5

• Segmentation can be now done within chromosome arms. The segmentation will not go across centromeres

CNAnorm 1.3.4

• with DNAcopy that will be followed up. (Thanks to Rose Brannon for reporting and documenting it)

CNAnorm 1.3.3

• the end of the window. This is still not 100% perfect (assumes costant width window and could go over the end of the chromosome), but it is in preparation of furhter improvements. When plotting only one chromosome, chromosome location is now at nicer (i.e. round) locations. Added capability to show location of centromeres as vertical dotted lines.

CNAnorm 1.3.1

• Properties of nearly every color, symbol, line etc can now be set by the user Fixed a bug when input has NA in Norm.

CNAnorm 1.1.8

• if there are no points in a certain area.

CNAnorm 1.1.7

• values used in peakPloidy. Added option fixVAxes to plotGenome to fix vertical axes to maxRatio and minRatio Fixed plotGenome so that the line from superimpose = "DNACopy" is actually a line and not a series of dots. If plotting only one chromosome, instead of plotting chr name, it plots chromosome position.

CNAnorm 1.1.6

• Fixed the 'mode' method Internal tiding

CNAnorm 1.1.5

CNAnorm 1.1.4

CNAnorm 1.1.3

CNAnorm 1.1.2

CNAnorm 1.1.1

CNAnorm 0.1.3.6

CNAnorm 0.1.3.5

CNAnorm 0.1.3.4