NEWS
CNAnorm 1.13.1
- chromosome does not start from 1
CNAnorm 1.9.2
- Added function CNAnormWorkflow
Added window weighting (for segmentation) depending on dispersion.
Fixed a bug that made plotGenome crash if the interval of interest had no
valid values.
Changed vignette to better reflect typical usage and defined basic and advanced use.
CNAnorm 1.7.1
CNAnorm 1.3.5
- Segmentation can be now done within chromosome arms. The segmentation will not
go across centromeres
CNAnorm 1.3.4
- with DNAcopy that will be followed up. (Thanks to Rose Brannon for reporting and documenting it)
CNAnorm 1.3.3
- the end of the window. This is still not 100% perfect (assumes costant width
window and could go over the end of the chromosome), but it is in preparation
of furhter improvements.
When plotting only one chromosome, chromosome location is now at nicer (i.e. round)
locations.
Added capability to show location of centromeres as vertical dotted lines.
CNAnorm 1.3.1
- Properties of nearly every color, symbol, line etc can now be set by the user
Fixed a bug when input has NA in Norm.
CNAnorm 1.1.8
- if there are no points in a certain area.
CNAnorm 1.1.7
- values used in peakPloidy.
Added option fixVAxes to plotGenome to fix vertical axes to maxRatio and minRatio
Fixed plotGenome so that the line from superimpose = "DNACopy" is
actually a line and not a series of dots.
If plotting only one chromosome, instead of plotting chr name, it plots chromosome position.
CNAnorm 1.1.6
- Fixed the 'mode' method
Internal tiding
CNAnorm 1.1.5
CNAnorm 1.1.4
CNAnorm 1.1.3
CNAnorm 1.1.2
CNAnorm 1.1.1
CNAnorm 0.1.3.6
CNAnorm 0.1.3.5
CNAnorm 0.1.3.4