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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CMEnt" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'CMEnt: Characterization of Methylation using positional ENTanglement'
version: 0.99.15
doi: 10.5281/zenodo.22674693
abstract: CMEnt implements a correlation-based method for identifying Differentially
  Methylated Regions (DMRs) from genomic seeds, commonly Differentially Methylated
  Positions (DMPs). The package expands regions around significant seeds considering
  both statistical significance and biological relevance of methylation changes. It
  supports array-based (450K, EPIC, EPICv2) and NGS methylation data through tabix-indexed
  files, provides DMR interaction analysis via motif similarity, and includes comprehensive
  visualization tools including circos plots and beta value heatmaps.
authors:
- family-names: Lemonidis
  given-names: Vasileios
  email: vasileios.lemonidis@uantwerpen.be
  orcid: https://orcid.org/0000-0002-6446-3536
preferred-citation:
  type: manual
  title: 'From DMPs to DMRs: CMEnt, Characterization of Methylation using positional
    ENTanglement'
  authors:
  - family-names: Lemonidis
    given-names: Vasileios
    email: vasileios.lemonidis@uantwerpen.be
    orcid: https://orcid.org/0000-0002-6446-3536
  - family-names: Op De Beeck
    given-names: Ken
  - family-names: Vermeesch
    given-names: Joris
  - family-names: Vandamme
    given-names: Timon
  - family-names: Van Camp
    given-names: Guy
  - family-names: Ibrahim
    given-names: Joe
  year: '2026'
  notes: R package version 2.0.0
  url: https://github.com/CMG-UA/CMEnt
  doi: 10.5281/zenodo.22674693
repository: https://bioc.r-universe.dev
repository-code: https://github.com/CMG-UA/CMEnt
commit: 6309a64fcfdc8f7d9be2b35bf9c3dc9594793756
url: https://cmg-ua.github.io/CMEnt/
date-released: '2026-10-19'
contact:
- family-names: Lemonidis
  given-names: Vasileios
  email: vasileios.lemonidis@uantwerpen.be
  orcid: https://orcid.org/0000-0002-6446-3536