Changes in version 0.99.14 SIGNIFICANT USER-VISIBLE CHANGES o Reduced size of produced CMEnt example vignette Changes in version 0.99.13 SIGNIFICANT USER-VISIBLE CHANGES o Move optional dependency installation to container setup, using the requested analysis inputs and genome. Package functions only check dependencies and provide installation instructions. o Ship the Dockerfile, CLI, and container setup scripts in inst/docker. o Document external tool installation and Windows limitations in INSTALL. o Replace donttest examples with small runnable examples and wrap long vignette prose and comments. BUG FIXES o Select Circos example regions on the chromosomes represented in the bundled data and allow vignette plotting errors to surface. Changes in version 0.99.9 NEW FEATURES o Initial Bioconductor submission of CMEnt. SIGNIFICANT USER-VISIBLE CHANGES o Added Bioconductor installation instructions and example data attribution for package review. BUG FIXES o Avoid changing installed script file permissions at package load time.