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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CHETAH" in publications use:'
type: software
title: 'CHETAH: Fast and accurate scRNA-seq cell type identification'
version: 1.21.0
doi: 10.1093/nar/gkz543
abstract: 'CHETAH (CHaracterization of cEll Types Aided by Hierarchical classification)
  is an accurate, selective and fast scRNA-seq classifier. Classification is guided
  by a reference dataset, preferentially also a scRNA-seq dataset. By hierarchical
  clustering of the reference data, CHETAH creates a classification tree that enables
  a step-wise, top-to-bottom classification. Using a novel stopping rule, CHETAH classifies
  the input cells to the cell types of the references and to "intermediate types":
  more general classifications that ended in an intermediate node of the tree.'
authors:
- family-names: Kanter
  given-names: Jurrian
  name-particle: de
  email: jurriandekanter@gmail.com
- family-names: Lijnzaad
  given-names: Philip
  email: p.lijnzaad@prinsesmaximacentrum.nl
preferred-citation:
  type: article
  title: 'CHETAH: a selective, hierarchical cell type identification method for single-cell
    RNA sequencing'
  authors:
  - family-names: Kanter
    given-names: Jurrian K
    name-particle: de
  - family-names: Lijnzaad
    given-names: Philip
    email: p.lijnzaad@prinsesmaximacentrum.nl
  - family-names: Candelli
    given-names: Tito
  - family-names: Margaritis
    given-names: Thanasis
  - family-names: Holstege
    given-names: Frank C P
  journal: Nucleic Acids Research
  year: '2019'
  month: '6'
  issn: 0305-1048
  doi: 10.1093/nar/gkz543
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jdekanter/CHETAH
url: https://github.com/jdekanter/CHETAH
date-released: '2021-11-20'
contact:
- family-names: Kanter
  given-names: Jurrian
  name-particle: de
  email: jurriandekanter@gmail.com