NEWS

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CGRphylo2 0.99.2 (2026-06-12)

• Address Bioconductor reviewer comments: fix DOI formatting, update Date field, reword Description for clarity, and fix NEWS versioning.

CGRphylo2 0.99.1 (2026-02-13)

• Added BiocParallel support: parallelCGR() now accepts a BPPARAM argument (default BiocParallel::bpparam()) replacing the num_cores integer parameter.
• Removed cgat(); all internal calls now use cgat_local() which avoids global-environment dependency.
• Renamed fastafile_new() to filter_N() for clarity.
• Removed .RData, .Rhistory, and INSTALL artefacts from the repository.

CGRphylo2 0.99.0 (2025-11-01)

• Initial Bioconductor submission.
• Added parallelCGR(), calculateDistanceMatrix(), saveMegaDistance(), savePhylipDistance(), cgrplot(), and from_DNAStringSet().