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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CEMiTool" in publications use:'
type: software
license: GPL-3.0-only
title: 'CEMiTool: Co-expression Modules identification Tool'
version: 1.29.0
doi: 10.1186/s12859-018-2053-1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CEMiTool
abstract: The CEMiTool package unifies the discovery and the analysis of coexpression
  gene modules in a fully automatic manner, while providing a user-friendly html report
  with high quality graphs. Our tool evaluates if modules contain genes that are over-represented
  by specific pathways or that are altered in a specific sample group. Additionally,
  CEMiTool is able to integrate transcriptomic data with interactome information,
  identifying the potential hubs on each network.
authors:
- family-names: Russo
  given-names: Pedro
  email: pedro.russo@usp.br
- family-names: Ferreira
  given-names: Gustavo
  email: gustavo.rodrigues.ferreira@usp.br
- family-names: Bürger
  given-names: Matheus
  email: burger@usp.br
- family-names: Cardozo
  given-names: Lucas
  email: lucas.cardozo@usp.br
- family-names: Lima
  given-names: Diogenes
  email: diogenes.lima@usp.br
- family-names: Hirata
  given-names: Thiago
  email: thiago.hirata@usp.br
- family-names: Lever
  given-names: Melissa
  email: melissa.lever@usp.br
- family-names: Nakaya
  given-names: Helder
  email: hnakaya@usp.br
preferred-citation:
  type: article
  title: 'CEMiTool: a Bioconductor package for performing comprehensive modular co-expression
    analyses'
  authors:
  - family-names: Russo
    given-names: Pedro de Sa Tavares
  - family-names: Ferreira
    given-names: Gustavo Rodrigues
  - family-names: Cardozo
    given-names: Lucas Esteves
  - family-names: Burger
    given-names: Matheus Carvalho
  - family-names: Arias-Carrasco
    given-names: Raul
  - family-names: Maruyama
    given-names: Sandra Regina
  - family-names: Hirata
    given-names: Thiago Dominguez Crespo
  - family-names: Lima
    given-names: Diogenes Saulo
  - family-names: Passos
    given-names: Fernando Marcon
  - family-names: Fukutani
    given-names: Kiyoshi Ferreira
  - family-names: Lever
    given-names: Melissa
    email: melissa.lever@usp.br
  - family-names: Silva
    given-names: Joao Santana
  - family-names: Maracaja-Coutinho
    given-names: Vinicius
  - family-names: Nakaya
    given-names: Helder Takashi Imoto
  journal: BMC Bioinformatics
  year: '2018'
  volume: '19'
  issue: '56'
  doi: 10.1186/s12859-018-2053-1
  url: https://doi.org/10.1186/s12859-018-2053-1
  start: '1'
  end: '13'
repository: https://bioc.r-universe.dev
commit: 5bf6507a2faa6662e01be86f10abca1110f60642
contact:
- family-names: Nakaya
  given-names: Helder
  email: hnakaya@usp.br