To cite CEMiTool in publications use:

Pedro S. T. Russo, Gustavo R. Ferreira, Lucas E. Cardozo, Matheus C. Burger, Raul Arias-Carrasco, Sandra R. Maruyama, Thiago D. C. Hirata, Diogenes S. Lima, Fernando M. Passos, Kiyoshi F. Fukutani, Melissa Lever, Joao S. Silva, Vinicius Maracaja-Coutinho Helder I. Nakaya CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses BMC Bioinformatics, 19:56, 1-13. URL https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2053-1

Corresponding BibTeX entry:

  @Article{,
    title = {CEMiTool: a Bioconductor package for performing
      comprehensive modular co-expression analyses},
    author = {Pedro de Sa Tavares Russo and Gustavo Rodrigues Ferreira
      and Lucas Esteves Cardozo and Matheus Carvalho Burger and Raul
      Arias-Carrasco and Sandra Regina Maruyama and Thiago Dominguez
      Crespo Hirata and Diogenes Saulo Lima and Fernando Marcon Passos
      and Kiyoshi Ferreira Fukutani and Melissa Lever and Joao Santana
      Silva and Vinicius Maracaja-Coutinho and Helder Takashi Imoto
      Nakaya},
    journal = {BMC Bioinformatics},
    year = {2018},
    volume = {19},
    number = {56},
    pages = {1--13},
    doi = {10.1186/s12859-018-2053-1},
    url = {https://doi.org/10.1186/s12859-018-2053-1},
  }