Changes in version 0.99.7 o Delete intermediate files in vignettes directory Changes in version 0.99.6 Updates per the review for bioconductor o Add VariantAnnotation to imports instead of suggests in DESCRIPTION o Move CC-GWAS vignette from vignettes folder to inst/docs Changes in version 0.99.4 Updates per the review for bioconductor o Remove LICENSE file - not needed as standard GPL-3 license is already in DESCRIPTION o Use importFrom in NAMESPACE instead of import o New package-level manual page o refactored code (vectorized where possible, all functions defined separately, added verbose argument) o Added utility function to convert VCF to dataframe for use in CCAFE methods o BiocCheck note: removed redundant stop/warn in signal conditions o BiocCheck note: shortened some functions o BiocCheck note: lines not longer than 80 characters o BiocCheck note: indents 4 spaces (not tab) o Using BiocStyle and TOC in CCAFE.rmd o No more redunant library calls in vignettes o fixed format of Integration with Bioconductor header o Added section name for Session Information to vignettes Changes in version 0.99.0 First devel version of the package. Contains 2 functions o CaseControl_AF o CaseControl_SE