NEWS

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CCAFE 0.99.7

• Delete intermediate files in vignettes directory

CCAFE 0.99.6

Updates per the review for bioconductor

• Add VariantAnnotation to imports instead of suggests in DESCRIPTION
• Move CC-GWAS vignette from vignettes folder to inst/docs

CCAFE 0.99.4

Updates per the review for bioconductor

• Remove LICENSE file - not needed as standard GPL-3 license is already in DESCRIPTION
• Use importFrom in NAMESPACE instead of import
• New package-level manual page
• refactored code (vectorized where possible, all functions defined separately, added verbose argument)
• Added utility function to convert VCF to dataframe for use in CCAFE methods
• BiocCheck note: removed redundant stop/warn in signal conditions
• BiocCheck note: shortened some functions
• BiocCheck note: lines not longer than 80 characters
• BiocCheck note: indents 4 spaces (not tab)
• Using BiocStyle and TOC in CCAFE.rmd
• No more redunant library calls in vignettes
• fixed format of Integration with Bioconductor header
• Added section name for Session Information to vignettes

CCAFE 0.99.0

First devel version of the package. Contains 2 functions

• CaseControl_AF
• CaseControl_SE