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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CBEA" in publications use:'
type: software
license: MIT
title: 'CBEA: Competitive Balances for Taxonomic Enrichment Analysis in R'
version: 1.5.0
doi: 10.18129/B9.bioc.CBEA
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CBEA
- type: url
  value: https://qpmnguyen.github.io/CBEA/
abstract: This package implements CBEA, a method to perform set-based analysis for
  microbiome relative abundance data. This approach constructs a competitive balance
  between taxa within the set and remainder taxa per sample. More details can be found
  in the Nguyen et al. 2021+ manuscript. Additionally, this package adds support functions
  to help users perform taxa-set enrichment analyses using existing gene set analysis
  methods. In the future we hope to also provide curated knowledge driven taxa sets.
authors:
- family-names: Nguyen
  given-names: Quang
  email: quangpmnguyen@gmail.com
  orcid: https://orcid.org/0000-0002-2072-3279
preferred-citation:
  type: manual
  title: 'CBEA: R package for performing CBEA approach'
  authors:
  - family-names: Nguyen
    given-names: Quang
    email: quangpmnguyen@gmail.com
    orcid: https://orcid.org/0000-0002-2072-3279
  year: '2024'
  url: http://www.bioconductor.org/packages/CBEA
  notes: https://github.com/qpmnguyen/CBEA - R package version 1.5.0
  doi: 10.18129/B9.bioc.CBEA
repository: https://bioc.r-universe.dev
repository-code: https://github.com/qpmnguyen/CBEA/
commit: 0234eb6881e872ac6e4438972cd60852732da462
url: https://github.com/qpmnguyen/CBEA
date-released: '2022-03-03'
contact:
- family-names: Nguyen
  given-names: Quang
  email: quangpmnguyen@gmail.com
  orcid: https://orcid.org/0000-0002-2072-3279
references:
- type: article
  title: 'CBEA: Competitive balances for taxonomic enrichment analysis'
  authors:
  - family-names: Nguyen
    given-names: Quang
  year: '2024'
  journal: bioRxiv
  doi: 10.1101/TODO
  url: https://www.biorxiv.org/content/10.1101/TODO