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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BulkSignalR" in publications use:'
type: software
license: CECILL-1.0
title: 'BulkSignalR: Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics)
  data, or spatial transcriptomics'
version: 0.99.22
doi: 10.1093/nar/gkad352
abstract: Inference of ligand-receptor (LR) interactions from bulk expression (transcriptomics/proteomics)
  data, or spatial transcriptomics. BulkSignalR bases its inferences on the LRdb database
  included in our other package, SingleCellSignalR available from Bioconductor. It
  relies on a statistical model that is specific to bulk data sets. Different visualization
  and data summary functions are proposed to help navigating prediction results.
authors:
- family-names: Colinge
  given-names: Jacques
  email: jacques.colinge@inserm.fr
  orcid: https://orcid.org/0000-0003-2466-4824
- family-names: Villemin
  given-names: Jean-Philippe
  email: jpvillemin@gmail.com
  orcid: https://orcid.org/0000-0002-1838-5880
preferred-citation:
  type: article
  title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic
    datasets with BulkSignalR
  authors:
  - family-names: Villemin
    given-names: Jean-Philippe
    email: jpvillemin@gmail.com
    orcid: https://orcid.org/0000-0002-1838-5880
  - family-names: Bassaganyas
    given-names: Laia
  - family-names: Pourquier
    given-names: Didier
  - family-names: Boissiere
    given-names: Florence
  - family-names: Cabello-Aguilar
    given-names: Simon
  - family-names: Crapez
    given-names: Evelyne
  - family-names: Tanos
    given-names: Rita
  - family-names: Cornillot
    given-names: Emmanuel
  - family-names: Turtoi
    given-names: Andrei
  - family-names: Colinge
    given-names: Jacques
    email: jacques.colinge@inserm.fr
    orcid: https://orcid.org/0000-0003-2466-4824
  journal: Nucleic Acids Research
  year: '2023'
  volume: '51'
  issue: '10'
  doi: 10.1093/nar/gkad352
  start: 4726-4744
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ZheFrench/BulkSignalR
commit: a707d8a2cdc4076c2f8a4a546c5cbdcfc7964dec
url: https://github.com/ZheFrench/BulkSignalR
contact:
- family-names: Villemin
  given-names: Jean-Philippe
  email: jpvillemin@gmail.com
  orcid: https://orcid.org/0000-0002-1838-5880