Changes in version 2.30.0                        

BUG FIXES

    o   Addressed issue where code chunks in HTML output did not have the
	correct background colour

    o   Fixed incompatibility with ragged2e LaTeX package distributed in
	TexLive 2023
	(https://github.com/Bioconductor/BiocStyle/issues/105)

                       Changes in version 2.28.0                        

BUG FIXES

    o   Addressed issue where, when using newer versions of Pandoc, footnotes 
	would appear at the bottom of HTML output rather than be moved to 
	the margin.

    o   Fixed problem including references in R Markdown documents when the
	output format was BiocStyle::pdf_document
	(https://github.com/Bioconductor/BiocStyle/issues/94)

                       Changes in version 2.24.0                        

BUG FIXES

    o   Fixed incompatibility with recent versions of the longtable latex package
	when producing a PDF vignette.  This bug manifested with the message
	'LaTeX Error: Missing \begin{document}.' when attempting to knit.
	(https://github.com/Bioconductor/BiocStyle/issues/89)

                       Changes in version 2.22.0                        

USER-VISIBLE CHANGES

    o   Added section to HTML vignette regarding accessibility considerations
	when creating plots and figures.

BUG FIXES AND IMPROVEMENTS TO HTML STYLE

    o   Improved navigation for screen readers by adding role='link' and 
	tabindex='0' to elements in the table of contents.  TOC navigation can also
	be followed by pressing "Enter" when selected in addition to clicking with 
	the cursor.

    o   Addressed further styling issues for code blocks, introduced by changes
	in rmarkdown.  This time re-introducing padding around <pre> tags.

                       Changes in version 2.20.0                        

    o   Addressed styling issues for output code blocks, introduced by changes
	in rmarkdown version 2.7.0 
	(https://github.com/Bioconductor/BiocStyle/issues/86)

                       Changes in version 2.18.0                        

BUG FIXES

    o   Fix issue where images created with the `fig.small=TRUE` chunk argument
	were not displayed in HTML output 
	(https://github.com/Bioconductor/BiocStyle/issues/83).

                        Changes in version 2.8.0                        

SIGNIFICANT USER-VISIBLE CHANGES

    o   Add 'relative_path' argument to 'pdf_document'

    o   Add argument 'titlecaps' to 'html_document'

    o   Defunct deprecated functions

BUG FIXES

    o   Fix a bug in generating navigation links which resulted in an empty
	  document when there were no subsections to merge

                        Changes in version 2.6.0                        

SIGNIFICANT USER-VISIBLE CHANGES

    o   Rename 'latex2', 'pdf_document2' and 'html_document2' to 'latex', 'pdf_document' and 'html_document', respectively

    o   Rename argument to 'pdf_document' from 'use.unsrturl' to 'use_unsrturl' for consistency with rmarkdown naming scheme

    o   Split figure/table captions on ". " rather than "." in order to minimize chances of hitting decimal point in numbers, etc.

BUG FIXES AND IMPROVEMENTS TO PDF STYLE

    o   Make knitr option 'fig.pos' functional in 'pdf_document'

    o   Improve formatting of TOC chapter entries (https://github.com/Bioconductor/BiocStyle/issues/35)

    o   Adjust width of non-floating figures according to the 'fig.wide'/'fig.small' setting (reported by Aaron Lun)

    o   Robustify \texttt, e.g.  by enabling backticks and fixing the substitution of control spaces

    o   Update LaTeX code highlighting macros for pandoc output (reported by Vince Carey)

    o   Silence spurious warning in 'latex()' emitted when the source file is missing a final EOL

    o   Fix broken code in knitr hook adjusting page width

    o   Include package version field in R Markdown documents even if they are missing an abstract (https://github.com/Bioconductor/BiocStyle/issues/29)

    o   Correct way of enclosing non-floating figures in LaTeX 'adjustwidth' environment (https://github.com/Bioconductor/BiocStyle/issues/28)

BUG FIXES AND IMPROVEMENTS TO HTML STYLE

    o   Correct displaying of superscript text

    o   Allow modifying table layout in 'knitr::kable' (https://github.com/Bioconductor/BiocStyle/issues/30)

    o   Correct padding of nested lists, and indentation of document date and multi-line headings

    o   Fix a bug in the function matching author affiliations (https://support.bioconductor.org/p/98155/)

    o   Proper horizontal alignment of ggplotly graphics (https://support.bioconductor.org/p/97609/)

    o   Fix compatibility with 'runtime: shiny' document option

                        Changes in version 2.4.0                        

NEW FEATURES

    o   Vignette "Authoring R Markdown vignettes"

    o   R Markdown templates for 'pdf_document2' and 'html_document2'

    o   Standard way of specifying author affiliations

    o   Support for short title in R Markdown PDF output

    o   Argument 'relative.path' to 'latex2()' (https://support.bioconductor.org/p/90352/)

SIGNIFICANT USER-VISIBLE CHANGES

    o   Increase column width in order to accommodate 80 characters wide code chunks

    o   Separate caption title from description with newline

    o   Use canonical URL to link to CRAN packages (https://github.com/Bioconductor/BiocStyle/issues/24)

    o   Consistently number equations on right hand side across different output formats

    o   Numerous CSS tweaks

BUG FIXES AND IMPROVEMENTS

    o   Support for PDFs typeset with 9pt and 8pt font size

    o   Proper formatting of 'longtable' captions

    o   Fix to retain spaces in '\texttt'

    o   Replace carets "\^{}" by "\textasciicircum" to fix incompatibility with LaTeX 'soul' package used for inline code highlighting

    o   Patch to avoid overfull pages containing a float followed by a longtable

                        Changes in version 2.2.0                        

NEW FEATURES

    o   New Bioconductor HTML Style. See package vignettes for details.

BUG FIXES AND IMPROVEMENTS to Bioconductor LaTeX Style 2

    o   Use `\path` for file names to allow long line breaks

    o   Load 'nowidow' LaTeX package to prevent widows and orphans

    o   Patch bug in 'titlesec' 2.10.1 (http://tex.stackexchange.com/q/299969/102422)

    o   Pass option `multiple` to 'footmisc' for better handling of consecutive footnotes

    o   Load 'marginfix' LaTeX package to prevent margin notes from overflowing the bottom margin

    o   Fix the issue with color spilling out on margin notes (https://github.com/Bioconductor/BiocStyle/issues/5)

    o   Use `fig.asp` to override figure height (https://github.com/Bioconductor/BiocStyle/issues/4)

    o   Fix compatibility with the 'float' package, in particular the `[H]` placement specifier

    o   Load 'marginfix' LaTeX package to prevent margin notes from overflowing the bottom margin

    o   Enclose wide floats in `\blockmargin` and `\unblockmargin` to prevent footnotes from entering them

    o   Move the footnote mark inside margin notes

    o   Add vertical skip after margin phantoms of wide floats for better alignment of margin notes with paragraph text

    o   Fix concatenation of `includes` reported in https://github.com/Bioconductor/BiocStyle/issues/8

    o   Stratify parnote mark definition depending on package version (https://github.com/Bioconductor/BiocStyle/issues/7)

    o   Capitalize default opening words in `\comment`, `\warning` and `\fixme`, and mention the optional argument in the vignette

                        Changes in version 2.0.0                        

    o   New Bioconductor LaTeX Style. See package vignettes for details.

                        Changes in version 1.8.0                        

    o   R Markdown templates for Bioconductor HTML and PDF documents

    o   Suggest 'rmarkdown' as the default engine for .Rmd documents

    o   Simplified use with 'rmarkdown' - no need to include a separate code chunk calling 'BiocStyle::markdown' anymore

    o   Functions facilitating the inclusion of document compilation date and package version in the .Rmd document header

                        Changes in version 1.4.0                        

USER VISIBLE CHANGES

    o   Support for markdown documents

    o   Add \Githubpkg markup command

                        Changes in version 1.2.0                        

USER VISIBLE CHANGES

    o   Remove dependency on 'helvet' LaTeX package to allow for the same font
	  both in Sweave and knitr

    o   Improve package vignette by adding paragraphs about building vignettes
	  and using bibliography

    o   knitr chunk_opts error=FALSE by default, so failures during vignette
	  processing are signaled to R CMD build and R CMD check

    o   Name-mangle \comment mark-up to avoid conflicts with other LaTeX styles

    o   Introduce \bioctitle to allow for full and short (header) titles

    o   Add BiocStyle::latex option 'use.unsrturl=TRUE' to use the 'unsrturl'
	  bibliography style by default

BUG FIXES

    o   Avoid use of 'titling' LaTeX package to circumvent the conflict w/ 
	  \footnote in \author

                        Changes in version 1.0.0                        

USER VISIBLE CHANGES

    o   Rename \Rpkg{} as \CRANpkg{} to reflect functionality

BUG FIXES

    o   Avoid option conflict with \usepackage{colors}