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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BioQC" in publications use:'
type: software
title: 'BioQC: Detect tissue heterogeneity in expression profiles with gene sets'
version: 1.33.0
abstract: BioQC performs quality control of high-throughput expression data based
  on tissue gene signatures. It can detect tissue heterogeneity in gene expression
  data. The core algorithm is a Wilcoxon-Mann-Whitney test that is optimised for high
  performance.
authors:
- family-names: Zhang
  given-names: Jitao David
  email: jitao_david.zhang@roche.com
- family-names: Badi
  given-names: Laura
- family-names: Sturm
  given-names: Gregor
  email: mail@gregor-sturm.de
- family-names: Ambs
  given-names: Roland
- family-names: Davydov
  given-names: Iakov
preferred-citation:
  type: article
  title: Detect tissue heterogeneity in gene expression data with BioQC
  authors:
  - family-names: Zhang
    given-names: Jitao David
    email: jitao_david.zhang@roche.com
  - family-names: Hatje
    given-names: Klas
  - family-names: Sturm
    given-names: Gregor
    email: mail@gregor-sturm.de
  - family-names: Broger
    given-names: Clemens
  - family-names: Ebeling
    given-names: Martin
  - family-names: Burtin
    given-names: Martine
  - family-names: Terzi
    given-names: Fabiola
  - family-names: Pomposiello
    given-names: Silvia Ines
  - family-names: Badi
    given-names: Laura
  journal: BMC Genomics
  year: '2017'
  volume: '18'
  issue: '1'
  url: http://accio.github.io/BioQC/
  start: '277'
repository: https://bioc.r-universe.dev
url: https://accio.github.io/BioQC
date-released: '2021-08-18'
contact:
- family-names: Zhang
  given-names: Jitao David
  email: jitao_david.zhang@roche.com
references:
- type: article
  title: Inducers of the endothelial cell barrier identified through chemogenomic
    screening in genome-edited hPSC-endothelial cells
  authors:
  - family-names: Roudnicky
    given-names: F.
  - family-names: Zhang
    given-names: J. D.
  - family-names: Kim
    given-names: B. K.
  - family-names: Pandya
    given-names: N. J.
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    given-names: Y.
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    given-names: L.
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    given-names: H.
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    given-names: P.
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    given-names: S.
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    given-names: M.
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    given-names: S.
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    given-names: O.
  - family-names: Sturm
    given-names: G.
  - family-names: Kueppers
    given-names: V.
  - family-names: Christensen
    given-names: K.
  - family-names: Goldstein
    given-names: L. D.
  - family-names: Tzouros
    given-names: M.
  - family-names: Banfai
    given-names: B.
  - family-names: Modrusan
    given-names: Z.
  - family-names: Graf
    given-names: M.
  - family-names: Patsch
    given-names: C.
  - family-names: Burcin
    given-names: M.
  - family-names: Meyer
    given-names: C. A.
  - family-names: Westenskow
    given-names: P. D.
  - family-names: Cowan
    given-names: C. A.
  journal: Proceedings of the National Academy of Sciences
  publisher:
    name: National Academy of Sciences
  url: https://www.pnas.org/content/early/2020/08/04/1911532117
  year: '2020'
  volume: '117'
  issue: '33'
  start: 19854-19865