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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BioNet" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'BioNet: Routines for the functional analysis of biological networks'
version: 1.65.0
abstract: This package provides functions for the integrated analysis of protein-protein
  interaction networks and the detection of functional modules. Different datasets
  can be integrated into the network by assigning p-values of statistical tests to
  the nodes of the network. E.g. p-values obtained from the differential expression
  of the genes from an Affymetrix array are assigned to the nodes of the network.
  By fitting a beta-uniform mixture model and calculating scores from the p-values,
  overall scores of network regions can be calculated and an integer linear programming
  algorithm identifies the maximum scoring subnetwork.
authors:
- family-names: Dittrich
  given-names: Marcus
  email: marcus.dittrich@biozentrum.uni-wuerzburg.de
- family-names: Beisser
  given-names: Daniela
preferred-citation:
  type: article
  title: 'BioNet: an R-package for the Functional Analysis of Biological Networks'
  authors:
  - family-names: Beisser
    given-names: Daniela
  - family-names: Klau
    given-names: Gunnar W.
  - family-names: Dandekar
    given-names: Thomas
  - family-names: Mueller
    given-names: Tobias
  - family-names: Dittrich
    given-names: Marcus
    email: marcus.dittrich@biozentrum.uni-wuerzburg.de
  journal: Bioinformatics
  year: '2010'
  volume: '26'
  issue: '8'
  start: 1129-1130
repository: https://bioc.r-universe.dev
url: http://bionet.bioapps.biozentrum.uni-wuerzburg.de/
date-released: '2015-09-11'
contact:
- family-names: Dittrich
  given-names: Marcus
  email: marcus.dittrich@biozentrum.uni-wuerzburg.de
references:
- type: article
  title: 'Identifying functional modules in protein-protein interaction networks:
    an integrated exact approach'
  authors:
  - family-names: Dittrich
    given-names: Marcus T
  - family-names: Klau
    given-names: Gunnar W
  - family-names: Rosenwald
    given-names: Andreas
  - family-names: Dandekar
    given-names: Thomas
  - family-names: Mueller
    given-names: Tobias
  journal: Bioinformatics
  year: '2008'
  volume: '24'
  issue: '13'
  start: i223
  end: i231