NEWS
BioNAR 1.9.2
- Basic clustering is component wise now. That means that before clustering
algorithm application graph split into weak components, to which clustering
algorithms applied independently. If algorithm fails on some component, whole
component considered as a cluster an
BioNAR 1.7
- Add function to calculate the BowTie decomposition of the graph.
BioNAR 1.3
- Take into account edge weights in clustering algorithms and centrality measure
calculations.
- Add calculation of the DYNAMO perturbation pattern from signed weight directed
networks proposed in Santolini,M. and Barabasi,A.-L. (2018) PNAS 169, 201720589
- Decoupled from synaptome.db and synaptome.data packages. All code, related
to graph building from the synaptome.db data is moved to synaptome.db package.
BioNAR 1.2.1
- Allow analysis of directed graphs and add four new centrality measures specific
for the directed graphs.
- Modify annotation functions to allow annotate nodes not only by its name
propety but by any other arbitrary property if its value uniquely identify
the node.
- Added new framework for the visualisation and analysis of enrichment results.
BioNAR 0.99.001
- Added a
NEWS.md file to track changes to the package.