NEWS

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BioNAR 1.3

• Take into account edge weights in clustering algorithms and centrality measure calculations.
• Add calculation of the DYNAMO perturbation pattern from signed weight directed networks proposed in Santolini,M. and Barabasi,A.-L. (2018) PNAS 169, 201720589
• Decoupled from synaptome.db and synaptome.data packages. All code, related to graph building from the synaptome.db data is moved to synaptome.db package.

BioNAR 1.2.1

• Allow analysis of directed graphs and add four new centrality measures specific for the directed graphs.
• Modify annotation functions to allow annotate nodes not only by its name propety but by any other arbitrary property if its value uniquely identify the node.
• Added new framework for the visualisation and analysis of enrichment results.

BioNAR 0.99.001

• Added a NEWS.md file to track changes to the package.