Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.53.0
Date: 2025-07-24
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katja.hebestreit@gmail.com>
Depends: R (>= 3.5.0), methods, S4Vectors, IRanges (>= 1.17.24),
        GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges, Seqinfo,
        GenomicRanges, SummarizedExperiment, rtracklayer, parallel,
        betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:40 UTC
RemoteUrl: https://github.com/bioc/BiSeq
RemoteRef: HEAD
RemoteSha: 773a1eaf9f126a5919cd27316c3d9a03cdb70516
NeedsCompilation: no
Packaged: 2026-07-03 21:32:04 UTC; root