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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BiGGR" in publications use:'
type: software
title: 'BiGGR: Constraint based modeling in R using metabolic reconstruction databases'
version: 1.41.0
doi: doi:10.1371/journal.pone.0119016
identifiers:
- type: doi
  value: 10.32614/CRAN.package.BiGGR
abstract: This package provides an interface to simulate metabolic reconstruction
  from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction
  databases. The package facilitates flux balance analysis (FBA) and the sampling
  of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized
  with hypergraphs.
authors:
- family-names: Gavai
  given-names: Anand K.
  email: anand.gavai@bioinformatics.nl
- family-names: Hettling
  given-names: Hannes
  email: hannes.hettling@naturalis.nl
preferred-citation:
  type: article
  title: Using Bioconductor Package BiGGR for Metabolic Flux Estimation Based on Gene
    Expression Changes in Brain
  authors:
  - family-names: Gavai
    given-names: Anand K.
    email: anand.gavai@bioinformatics.nl
  - family-names: Supandi
    given-names: Farahaniza
  - family-names: Hettling
    given-names: Hannes
    email: hannes.hettling@naturalis.nl
  - family-names: Murrell
    given-names: Paul
  - family-names: Leunissen
    given-names: Jack AM
  - family-names: Beek
    given-names: Johannes HGM
    name-particle: van
  journal: PLoS ONE
  year: '2015'
  volume: '10'
  issue: '3'
  doi: doi:10.1371/journal.pone.0119016
  start: e0119016
repository: https://bioc.r-universe.dev
commit: 7de164bc57f2e497d02bc4fcbeba53b780fd7f15
url: http://www.bioconductor.org/
date-released: '2019-04-10'
contact:
- family-names: Gavai
  given-names: Anand K.
  email: anand.gavai@bioinformatics.nl
- family-names: Hettling
  given-names: Hannes
  email: hannes.hettling@naturalis.nl