BiGGR publication is now available at PLoS ONE! Use citation("BiGGR") to see how to correctly cite BiGGR.
rmvSpliceVariant: remove splicing variants from entrez gene ids.
gprMapping: maps gene expression values based on GPR rules as found in ReconX database. GPR rules are interpreted based on summary statistics.
gprMappingAvg: maps gene expression values with GPR rules based on averages
Recon2: Updated new version of Recon2 from www.humanmetabolism.org
Updated vignette. Equality constraints on GABA shunt and pentose phosphate pathway fluxes are now used in FBA and ensemble simulations.
Updated vignette and bibtex file. FBA and ensemble sampling are now done with integration of brain metabolite uptake measurement data.
Added new function 'sampleFluxEnsemble' which can be used to generate a posterior distribution of flux vectors with respect to measurement error in certain fluxes. An example of 'sampleFluxEnsemble' has been added to the package vignette.
Added LIM model file 'Glycolysis_TCA.LIM' to the examples directory. This file contains the model which is build in the examples.
Fixed warnings in functions buildSBMLFromReactionIDs and createLIMFromSBML to seperate missing identifiers with a comma.
Initial release of BiGGR in Bioconductor. Package was formerly available on CRAN (http://cran.r-project.org/src/contrib/Archive/BiGGR/).