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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BgeeDB" in publications use:'
type: software
license: GPL-3.0-only
title: 'BgeeDB: Annotation and gene expression data retrieval from Bgee database.
  TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology'
version: 2.31.0
abstract: 'A package for the annotation and gene expression data download from Bgee
  database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to
  genes by expression patterns.'
authors:
- family-names: Komljenovic
  given-names: Andrea
  email: julien.wollbrett@unil.ch
- family-names: Roux
  given-names: Julien
  email: julien.roux@unibas.ch
preferred-citation:
  type: article
  title: BgeeDB, an R package for retrieval of curated expression datasets and for
    gene list enrichment tests
  authors:
  - family-names: Komljenovic
    given-names: Andrea
    email: julien.wollbrett@unil.ch
  - family-names: Roux
    given-names: Julien
    email: julien.roux@unibas.ch
  - family-names: Wollbrett
    given-names: Julien
  - family-names: Robinson-Rechavi
    given-names: Marc
  - family-names: Bastian
    given-names: Frederic
  journal: F1000Research
  year: '2018'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BgeeDB/BgeeDB_R
url: https://github.com/BgeeDB/BgeeDB_R
date-released: '2022-03-31'
contact:
- family-names: Komljenovic
  given-names: Andrea
  email: julien.wollbrett@unil.ch
- family-names: Roux
  given-names: Julien
  email: julien.roux@unibas.ch
references:
- type: article
  title: 'The Bgee suite: integrated curated expression atlas and comparative transcriptomics
    in animals'
  authors:
  - family-names: Bastian
    given-names: Frederic
  - family-names: Roux
    given-names: Julien
  - family-names: Niknejad
    given-names: Anne
  year: '2021'
  journal: Nucleic Acids Research
  volume: '49'
  issue: D1
  doi: 10.1093/nar/gkaa793
  start: D831–D847