Package: BgeeDB
Type: Package
Title: Annotation and gene expression data retrieval from Bgee
        database. TopAnat, an anatomical entities Enrichment Analysis
        tool for UBERON ontology
Version: 2.39.0
Date: 2024-08-20
Author: Andrea Komljenovic [aut, cre], Julien Roux [aut, cre]
Maintainer: Julien Wollbrett <julien.wollbrett@unil.ch>, Julien Roux
 <julien.roux@unibas.ch>, Andrea Komljenovic
 <andreakomljenovic@gmail.com>, Frederic Bastian
 <bgee@sib.swiss>
Description: A package for the annotation and gene expression data
        download from Bgee database, and TopAnat analysis: GO-like
        enrichment of anatomical terms, mapped to genes by expression
        patterns.
Encoding: UTF-8
Depends: R (>= 3.6.0), topGO, tidyr
Imports: R.utils, data.table, curl, RCurl, digest, methods, stats,
        utils, dplyr, RSQLite, graph, Biobase, zellkonverter, anndata,
        HDF5Array, bread
License: GPL-3 + file LICENSE
Roxygen: list(markdown = TRUE)
URL: https://github.com/BgeeDB/BgeeDB_R
BugReports: https://github.com/BgeeDB/BgeeDB_R/issues
VignetteBuilder: knitr
biocViews: Software, DataImport, Sequencing, GeneExpression,
        Microarray, GO, GeneSetEnrichment
Suggests: knitr, BiocStyle, testthat, rmarkdown, markdown
LazyLoad: yes
RoxygenNote: 7.3.2
NeedsCompilation: no
Config/pak/sysreqs: make libicu-dev libpng-dev libssl-dev python3
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-29 08:33:53 UTC
RemoteUrl: https://github.com/bioc/BgeeDB
RemoteRef: HEAD
RemoteSha: 75ea4512c2469e5b4638de20c55f0ad7e5516a49
Packaged: 2026-06-10 06:59:21 UTC; root