Package: BenchHub
Title: Comprehensive Collection of Curated Benchmarking Datasets and
        their Evaluation
Version: 0.99.15
Authors@R: c(
    person("Cabiria", "Liang", , "xiaoqi.liang@sydney.edu.au", role = "aut"),
    person("Sanghyun", "Kim", , "sanghyun.kim@sydney.edu.au", role = "aut"),
    person("Nick", "Robertson", , "nicholas.robertson@sydney.edu.au", role = c("aut")),
    person("Marni", "Torkel", , "marni.torkel@sydney.edu.au", role = "aut"),
    person("Yue", "Cao", , "yue.cao@sydney.edu.au", role = "aut", comment = c(ORCID = "0000-0002-2356-4031")),
    person("Dario", "Strbenac", , "dario.strbenac@sydney.edu.au", role = "aut"),
    person("Jean", "Yang", , "jean.yang@sydney.edu.au", role = "aut"),
    person("SOMS", "Maintainer", , "maths.bioconductor@sydney.edu.au", role = c("aut", "cre"))
  )
Description: The trio is the combination of a data set, a metric and
        supporting evidence which provides some best case scenario, if
        not the ground truth itself. BenchHub has data downloaders for
        FigShare, G.E.O., and ExperimentHub. Caching is used to avoid
        lengthy downloads after the first time a data set is accessed.
        The user may also specify their own data set and supporting
        evidence. The Benchmark Insights module provides functionality
        for comparing and contrasting the performance of alternative
        algorithms.
biocViews: Infrastructure, DataImport, DataRepresentation, Software,
        WorkflowStep, Visualization
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.5.0)
Imports: cli, fs, glue, R6, rlang, httr2, stringr, purrr, dplyr,
        reshape2, utils, curl, googlesheets4, survAUC, Hmisc, ggrepel,
        ggsci, ggcorrplot, broom, dotwhisker, splitTools, magrittr,
        withr, ggplot2, data.table, jsonlite
Suggests: anndata, readr, GEOquery, ExperimentHub, zen4R, knitr, ks,
        rmarkdown, SingleCellExperiment, SummarizedExperiment,
        survival, cvTools, funkyheatmap, testthat (>= 3.0.0),
        clusterProfiler, DOSE, DO.db, EnsDb.Hsapiens.v86, BiocStyle,
        tidyverse, glmnet, scran, scuttle, edgeR
VignetteBuilder: knitr
Config/testthat/edition: 3
BugReports: https://github.com/SydneyBioX/BenchHub/issues
URL: https://sydneybiox.github.io/BenchHub/
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-29 03:20:16 UTC
RemoteUrl: https://github.com/bioc/BenchHub
RemoteRef: HEAD
RemoteSha: 7f702ca89fc07193d8369245b73d2fe4bbec1968
NeedsCompilation: no
Packaged: 2026-06-21 00:45:34 UTC; root
Author: Cabiria Liang [aut],
  Sanghyun Kim [aut],
  Nick Robertson [aut],
  Marni Torkel [aut],
  Yue Cao [aut] (ORCID: <https://orcid.org/0000-0002-2356-4031>),
  Dario Strbenac [aut],
  Jean Yang [aut],
  SOMS Maintainer [aut, cre]
Maintainer: SOMS Maintainer <maths.bioconductor@sydney.edu.au>