NEWS
BatChef 0.99.12
BatChef 0.99.11
- Solve warning messages caused by deprecated functions in scran package.
BatChef 0.99.10
- Remove direct slot access, remove ggplot print, and add README.md for extdata.
BatChef 0.99.9
BatChef 0.99.8
- Add optimal method prediction and two-dimensional space visualization based on characteristics of 130 real datasets.
BatChef 0.99.7
- Delete Python environment, created with basilisk package.
BatChef 0.99.5
- Delete Python correction methods to make lighter the package.
BatChef 0.99.4
- Migration to basilisk 1.21 and update Python to version 3.12.3.
BatChef 0.99.3
- Adjust the OpenSSL version in the Basilisk environment from 3.2.0 to 3.1.1.
BatChef 0.99.2
BatChef 0.99.1
- The
simulate_data and leiden_clustering functions were upgraded.
BatChef 0.99.0
- This version contains a common interface for batch effect correction methods in single-cell RNA-seq data.