NEWS

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BatChef 0.99.12

• Solve errors in tests.

BatChef 0.99.11

• Solve warning messages caused by deprecated functions in scran package.

BatChef 0.99.10

• Remove direct slot access, remove ggplot print, and add README.md for extdata.

BatChef 0.99.9

BatChef 0.99.8

• Add optimal method prediction and two-dimensional space visualization based on characteristics of 130 real datasets.

BatChef 0.99.7

• Delete Python environment, created with basilisk package.

BatChef 0.99.5

• Delete Python correction methods to make lighter the package.

BatChef 0.99.4

• Migration to basilisk 1.21 and update Python to version 3.12.3.

BatChef 0.99.3

• Adjust the OpenSSL version in the Basilisk environment from 3.2.0 to 3.1.1.

BatChef 0.99.2

BatChef 0.99.1

• The simulate_data and leiden_clustering functions were upgraded.

BatChef 0.99.0

• This version contains a common interface for batch effect correction methods in single-cell RNA-seq data.