Package: BasicSTARRseq
Type: Package
Title: Basic peak calling on STARR-seq data
Version: 1.41.0
Date: 2025-07-24
Author: Annika Buerger
Maintainer: Annika Buerger <annika.buerger@ukmuenster.de>
Imports: S4Vectors,methods,IRanges,Seqinfo,stats
Depends: GenomicRanges,GenomicAlignments
Description: Basic peak calling on STARR-seq data based on a method
        introduced in "Genome-Wide Quantitative Enhancer Activity Maps
        Identified by STARR-seq" Arnold et al. Science. 2013 Mar
        1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013
        Jan 17.
License: LGPL-3
Suggests: knitr
VignetteBuilder: knitr
biocViews: PeakDetection, GeneRegulation, FunctionalPrediction,
        FunctionalGenomics, Coverage
NeedsCompilation: no
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:42:35 UTC
RemoteUrl: https://github.com/bioc/BasicSTARRseq
RemoteRef: HEAD
RemoteSha: 3d6b5dfc97981b06fcf08251e5eb74608db86e12
Packaged: 2026-07-02 07:33:42 UTC; root