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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Banksy" in publications use:'
type: software
title: 'Banksy: Spatial transcriptomic clustering'
version: 1.1.0
abstract: Banksy is an R package that incorporates spatial information to cluster
  cells in a feature space (e.g. gene expression). To incorporate spatial information,
  BANKSY computes the mean neighborhood expression and azimuthal Gabor filters that
  capture gene expression gradients. These features are combined with the cell's own
  expression to embed cells in a neighbor-augmented product space which can then be
  clustered, allowing for accurate and spatially-aware cell typing and tissue domain
  segmentation.
authors:
- family-names: Singhal
  given-names: Vipul
- family-names: Lee
  given-names: Joseph
  email: joseph.lee@u.nus.edu
  orcid: https://orcid.org/0000-0002-4983-4714
preferred-citation:
  type: article
  title: 'BANKSY: A Spatial Omics Algorithm that Unifies Cell Typing and Tissue Domain
    Segmentation'
  authors:
  - family-names: Singhal
    given-names: Vipul
  - family-names: Chou
    given-names: Nigel
  - family-names: Lee
    given-names: Joseph
    email: joseph.lee@u.nus.edu
    orcid: https://orcid.org/0000-0002-4983-4714
  - family-names: Liu
    given-names: Jinyue
  - family-names: Chock
    given-names: Wan Kee
  - family-names: Lin
    given-names: Li
  - family-names: Chang
    given-names: Yun-Ching
  - family-names: Teo
    given-names: Erica
  - family-names: Lee
    given-names: Hwee Kuan
  - family-names: Chen
    given-names: Kok Hao
  - family-names: Prabhakar
    given-names: Shyam
  journal: bioRxiv
  year: '2022'
  url: https://www.biorxiv.org/content/10.1101/2022.04.14.488259
repository: https://bioc.r-universe.dev
repository-code: https://github.com/prabhakarlab/Banksy
url: https://github.com/prabhakarlab/Banksy
contact:
- family-names: Lee
  given-names: Joseph
  email: joseph.lee@u.nus.edu
  orcid: https://orcid.org/0000-0002-4983-4714