Package: Banksy
Title: Spatial transcriptomic clustering
Version: 1.9.6
Authors@R: c(
    person(given = "Vipul",
           family = "Singhal",
           role = c("aut")),
    person(given = "Joseph",
           family = "Lee",
           role = c("aut", "cre"),
           email = "joseph.lee@u.nus.edu",
           comment = c(ORCID="0000-0002-4983-4714"))
           )
Description: Banksy is an R package that incorporates spatial
        information to cluster cells in a feature space (e.g. gene
        expression). To incorporate spatial information, BANKSY
        computes the mean neighborhood expression and azimuthal Gabor
        filters that capture gene expression gradients. These features
        are combined with the cell's own expression to embed cells in a
        neighbor-augmented product space which can then be clustered,
        allowing for accurate and spatially-aware cell typing and
        tissue domain segmentation.
Depends: R (>= 4.4.0)
Imports: aricode, data.table, dbscan, Rcpp, SpatialExperiment,
        SingleCellExperiment, SummarizedExperiment, S4Vectors, stats,
        Matrix, MatrixGenerics, methods, mclust, igraph, irlba,
        parallel, leidenAlg (>= 1.1.0), utils, uwot, RcppHungarian
LinkingTo: Rcpp
License: file LICENSE
Encoding: UTF-8
URL: https://github.com/prabhakarlab/Banksy,
        https://prabhakarlab.github.io/Banksy
BugReports: https://github.com/prabhakarlab/Banksy/issues
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, sessioninfo, pals, scuttle, scater, scran,
        cowplot, ggplot2, testthat (>= 3.0.0), harmony, Seurat,
        ExperimentHub, spatialLIBD, BiocStyle
VignetteBuilder: knitr
Config/testthat/edition: 3
Collate: 'RcppExports.R' 'lazy.R' 'Banksy-package.R' 'cluster.R'
        'computation.R' 'data.R' 'misc.R' 'reduction.R' 'zzz.R'
biocViews: Clustering, Spatial, SingleCell, GeneExpression,
        DimensionReduction
Config/pak/sysreqs: libglpk-dev make libmagick++-dev gsfonts libicu-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-28 18:55:08 UTC
RemoteUrl: https://github.com/bioc/Banksy
RemoteRef: HEAD
RemoteSha: 70175fbfe10d5ee38efeaba86575bc55965c1ed3
NeedsCompilation: yes
Packaged: 2026-10-28 23:42:08 UTC; root
Author: Vipul Singhal [aut],
  Joseph Lee [aut, cre] (ORCID: <https://orcid.org/0000-0002-4983-4714>)
Maintainer: Joseph Lee <joseph.lee@u.nus.edu>