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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BaalChIP" in publications use:'
type: software
license: Artistic-2.0
title: 'BaalChIP: BaalChIP: Bayesian analysis of allele-specific transcription factor
  binding in cancer genomes'
version: 1.31.0
abstract: The package offers functions to process multiple ChIP-seq BAM files and
  detect allele-specific events. Computes allele counts at individual variants (SNPs/SNVs),
  implements extensive QC steps to remove problematic variants, and utilizes a bayesian
  framework to identify statistically significant allele- specific events. BaalChIP
  is able to account for copy number differences between the two alleles, a known
  phenotypical feature of cancer samples.
authors:
- family-names: Santiago
  given-names: Ines
  name-particle: de
  email: inesdesantiago@gmail.com
- family-names: Liu
  given-names: Wei
- family-names: Yuan
  given-names: Ke
- family-names: O'Reilly
  given-names: Martin
- family-names: Chilamakuri
  given-names: Chandra SR
- family-names: Ponder
  given-names: Bruce
- family-names: Meyer
  given-names: Kerstin
- family-names: Markowetz
  given-names: Florian
preferred-citation:
  type: article
  title: 'BaalChIP: Bayesian analysis of allele-specific transcription factor binding
    in cancer genomes'
  authors:
  - family-names: Santiago
    given-names: Ines
    name-particle: de
    email: inesdesantiago@gmail.com
  - family-names: Liu
    given-names: Wei
  - family-names: Ke
    given-names: Yuan
  - family-names: Martin
    given-names: O'Reilly
  - family-names: Chilamakuri
    given-names: Chandra
  - family-names: A. J. Ponder
    given-names: Bruce
  - family-names: B. Meyer
    given-names: Kerstin
  - family-names: Markowetz
    given-names: Florian
  year: '2017'
  journal: Genome Biology
  volume: '18'
  issue: '1'
  url: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1165-7
  start: '39'
repository: https://bioc.r-universe.dev
contact:
- family-names: Santiago
  given-names: Ines
  name-particle: de
  email: inesdesantiago@gmail.com