Selega A, Granneman S, Sanguinetti G (2016). BUMHMM: Computational pipeline for computing probability of modification from structure probing experiment data.. https://github.com/alinaselega/BUMHMM - R package version 1.37.0, http://www.bioconductor.org/packages/BUMHMM.

Selega A, Sirocchi C, Iosub I, Granneman S, Sanguinetti G (2016). “Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.” Nature Methods. doi:10.1038/nmeth.4068. http://www.nature.com/nmeth/journal/v14/n1/full/nmeth.4068.html.

Corresponding BibTeX entries:

  @Manual{,
    title = {BUMHMM: Computational pipeline for computing probability
      of modification from structure probing experiment data.},
    author = {Alina Selega and Sander Granneman and Guido Sanguinetti},
    year = {2016},
    url = {http://www.bioconductor.org/packages/BUMHMM},
    note = {https://github.com/alinaselega/BUMHMM - R package version
      1.37.0},
  }

  @Article{,
    title = {Robust statistical modeling improves sensitivity of
      high-throughput RNA structure probing experiments},
    author = {Alina Selega and Christel Sirocchi and Ira Iosub and
      Sander Granneman and Guido Sanguinetti},
    year = {2016},
    journal = {Nature Methods},
    doi = {10.1038/nmeth.4068},
    url =
      {http://www.nature.com/nmeth/journal/v14/n1/full/nmeth.4068.html},
  }