Package: BSgenome Title: Software infrastructure for efficient representation of full genomes and their SNPs Description: Infrastructure shared by all the Biostrings-based genome data packages. biocViews: Genetics, Infrastructure, DataRepresentation, SequenceMatching, Annotation, SNP URL: https://bioconductor.org/packages/BSgenome BugReports: https://github.com/Bioconductor/BSgenome/issues Version: 1.81.0 License: Artistic-2.0 Encoding: UTF-8 Authors@R: person("Hervé", "Pagès", role=c("aut", "cre"), email="hpages.on.github@gmail.com") Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.13.8), S4Vectors (>= 0.47.6), IRanges (>= 2.13.16), Seqinfo, GenomicRanges (>= 1.61.1), Biostrings (>= 2.77.2), BiocIO, rtracklayer (>= 1.69.1) Imports: utils, stats, matrixStats, XVector, Rsamtools (>= 2.25.1) Suggests: BiocManager, GenomeInfoDb, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.masked, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5, BSgenome.Scerevisiae.UCSC.sacCer1, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit, BSgenomeForge LazyLoad: yes Collate: utils.R OnDiskLongTable_old-class.R OnDiskLongTable-class.R OnDiskNamedSequences-class.R SNPlocs-class.R ODLT_SNPlocs-class.R OldFashionSNPlocs-class.R InjectSNPsHandler-class.R XtraSNPlocs-class.R BSgenome-class.R available.genomes.R injectSNPs.R getSeq-methods.R extractAt-methods.R bsapply.R BSgenomeViews-class.R BSgenome-utils.R export-methods.R AdvancedBSgenomeForge.R Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:31:48 UTC RemoteUrl: https://github.com/bioc/BSgenome RemoteRef: HEAD RemoteSha: bc88595d35b585059c6cdeb84a027dcdbeb379b4 NeedsCompilation: no Packaged: 2026-07-03 12:20:39 UTC; root Author: Hervé Pagès [aut, cre] Maintainer: Hervé Pagès